Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1355 ATGGTGGAAAGAAGAATTTCTTTATCCAAGGAAGCTAGACATGGGCTAGAATTTTTGAAGCGTAAAAGGCTTCAACGGGCAAAACTCATTACGGCCACTGAGACTAGTGTTGCTAACACGATGACTAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCATCATGTGGTATCAGATTACATGGTAATGCAGATGTCTTCTCCAAGCGGAAGGTGGATAAGTTTGACATGGGTGATCTTGAATGGACTGAGAAAATTCCAGAGTGTCCCGTGTACTGTCCAACGAAGGAGGAATTTGAGGATCCTCTGGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATTATTTCACCGTTGAGTGCTTCTGTTCCGGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAGCCACTTCGGCTTGCCGAGTGGGACACTGAAGACAAGGTCACGTTGTTCATGAGTGGAAGAAATTATACATTCCGCGATTTTGAGAAAATGGCGAACAAAGTATTTTCAGATAGATATTCTAGTGCTGGGTGTCTTCCTGCCACATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGACGGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCTTTTTCATCATCTCCCGCTGATCTGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCATGGTTGCCCAAGTCCAGTTTGCGCCTCTTGGAAACAGCAATTCCTGGAGTAACTGAACCTATGCTATACATTGGAATGCTGTTCAGTATGTTTGCTTGGCATGTAGAGGATCACTATTTGTACAGTATAAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCTGGTCATGCGGCATTGGATTTTGAAAGGGTAGTGAGAGAGCATGTTTACACTGATGATATTCTTTCAATTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGCAAAACTACTCTGTTTCCTCCAAATATTTTGTTGGATAATCAAGTCCCTGTCTACAAGACTGTCCAACAGCCTGGGGAGTTTGTAGTAACATTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGCGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGCCAGCGATATGCACTTCTTGACAGGGTGCCTCTGCTGCCTCACGAAGAACTTTTATGCAAAGAAGCAATGCTTCTTCATACAAACTTAGAACATGAAGATTCAGACTTTCCCTCTGCCGACCTGTTAGCACATAATTGTATAAAGATTTCTTTTGTGAATCTAATGCACTTTCAACATTGTGCTCGTTGGTTCCTAGTGAAATCAAGGGCTTGTACGAGAGTTTTTTCACATTCCCATGGTACAATTCTTTGTAGCCTCTGCAAAAGGGACTGTTATGTTGCTTATGTTGACTGTGAGTGTCACATGCATCCAGTGTGCCTTCGCCATGATATTGAAGCTCTTGGCTTCATCTGTGGGAGCAGACACACTCTTTATTTGAGGGAGGATATTACTGATATGGAAGCTGCAGCCAAGAGGTTTGAGCAGGAAGATGGAATTGTGGATGAGATTCTTAAGCAAACTAAGGGTGACAATAACATGTATTCATATCCTTTGACGAATATGTTCCAGAGAGCTGAGGCAAATGGATATACTCCTTATTGCGATATAGAATTTGATTCTATTATTGAACATTATACAACTCCAGATCAGGCAACAAATAATCAAGAGCGCAATTTACAAATTCAACATGCTTTAAGACATTGCCCAGATTATAAACCTGAAGTCTGCGAGGTTTCTTGTTCTGCTGGATCCACCCTGTGTTCTCTTTCAGAACCTATTGAGAGCTCTTCTGCTTCCAAAAATGATGATGGGCATGCTAACTTTACTTCAGGCTTTATTGATCATGAAGGATGTTGTGAAAGAGAATCTAATAGTGCATGCGAATCTTCACTTTCCTTGGCCCGCTATCACAAAACCTCAAGTAAACCACAGGGCAATGTTCATGGATTAGAGATGAAGCCTACAGTGGATAATGATGACGATTCAGATTCAGAAATATTTAGGGTAAAGCGGCCTTCTTCCCTGAAGGCAGAGAAGAGAAATTTGAATGCTACTATGTCTTCCAAGCATTCTGACCAACAGGGATTCAAACGCTTGAAGAAAGTTCTTCAAGAAGGAAGTTTCCCACAACCAATGGATTGCGGTAGAAGCAATGATTCAAGTAACAAATTTAATCATCTTGTTAAACGGAAATTTGATGGAGAAAGATCTTTGAAGGACAAATTTCCAAGGGGAAATAGCATTCCCACCTCTGTAAGGTGTAAGAATTTAGGAAATGAGGAAGTTAGTAGAGAGCGAGATCACCAGAGGAAAGATAGGTTGCAGATTAACTTGAAGTGTTATGATATGCCTCAATGGTAA 2505 0.4096 MVERRISLSKEARHGLEFLKRKRLQRAKLITATETSVANTMTRSGGDALRASASCGIRLHGNADVFSKRKVDKFDMGDLEWTEKIPECPVYCPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTLFMSGRNYTFRDFEKMANKVFSDRYSSAGCLPATFLEKEFWHEIACGRMETVEYACDVDGSAFSSSPADLLGNSKWNLKKLSWLPKSSLRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTDDILSIEGEDGAFDVLLGKTTLFPPNILLDNQVPVYKTVQQPGEFVVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLDRVPLLPHEELLCKEAMLLHTNLEHEDSDFPSADLLAHNCIKISFVNLMHFQHCARWFLVKSRACTRVFSHSHGTILCSLCKRDCYVAYVDCECHMHPVCLRHDIEALGFICGSRHTLYLREDITDMEAAAKRFEQEDGIVDEILKQTKGDNNMYSYPLTNMFQRAEANGYTPYCDIEFDSIIEHYTTPDQATNNQERNLQIQHALRHCPDYKPEVCEVSCSAGSTLCSLSEPIESSSASKNDDGHANFTSGFIDHEGCCERESNSACESSLSLARYHKTSSKPQGNVHGLEMKPTVDNDDDSDSEIFRVKRPSSLKAEKRNLNATMSSKHSDQQGFKRLKKVLQEGSFPQPMDCGRSNDSSNKFNHLVKRKFDGERSLKDKFPRGNSIPTSVRCKNLGNEEVSRERDHQRKDRLQINLKCYDMPQW 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1355 834 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Dere09g1355 834 MobiDBLite consensus disorder prediction 701 720 - -
Dere09g1355 834 MobiDBLite consensus disorder prediction 686 720 - -
Dere09g1355 834 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Dere09g1355 834 Pfam jmjN domain 89 121 IPR003349 -
Dere09g1355 834 Gene3D Cupin 88 445 - -
Dere09g1355 834 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Dere09g1355 834 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 784 - -
Dere09g1355 834 SMART JmjN_1 87 128 IPR003349 -
Dere09g1355 834 SMART cupin_9 232 405 IPR003347 -
Dere09g1355 834 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Dere09g1355 834 FunFam Lysine-specific demethylase isoform A 83 432 - -
Dere09g1355 834 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1355 Dere-ChrDere09 17604710 17610544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1355 85 423 JUMONJI Transcription Factor Family AT1G30810 36.658 1.74e-60 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere09g1355 JmjC 1.4e-38 CL0029