Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1354 ATGGAGCTATTTCCAGCACAGCCAGATTTGTCCTTGCAAATCAGCCCTCCAAACAGCAAACCCACATCAACAAGTTGGAGAAGAGAAGAAGGAGAGGTGGATTTGGGGTTCTGGAAGAGAGCTTTGGACTCCAGAAACTCACTCTCACTTTCATCATCAATGCCCAAACCCAAAATCACTGATCATCACCATAATCATAATAACTCCTCCGACCTCTCACTCTTCTCCTCCAATGATATTCCAACAACAAGGCGTTCTTCTTCTTCTTCTTCTTCTTCACACTTCTCCAACAACAACAACTCTAACCTTAATAGCTTCCACAACCACCATCACCACCACCACCACTTACTCCAAAACGGCAACAATATTCACTACTCCCACCGCCATCAGCAGCAGCACCAACACTCAGTGCTGTTGCAGCACCACCAGAGCCTGGGCCAAGACCTGGGCTTTCTCAGGCCCATCAGAGGAATCCCTCTCTACCAAAACCCTCCTCATTCTATCCCATTTGCTTTAGAAGCTAGTAATTATTCTACTACTCCAACTGTTCCTCCATCTATATCTAACATGACGAAAACAACTTCAAGCCCTTTTCAATCTCATCAAGGTTTGATGAGGTCGAGGTTCTTGTCTCGCTTTCCTGCTAAGCGCAGCATGAGAGCTCCTCGGATGCGTTGGACTACTACCCTCCATGCTCGCTTTGTCCATGCCGTTGAGCTTCTAGGTGGCCATGAAAGGGCAACGCCAAAGTCAGTTCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCCCATGTTAAATCTCATTTGCAGATGTACCGAACGGTGAAAACTACGGATAGAGCAGCGGCTTCCTCAGGGCAATCTGATGTGTATGATAATGGATCATCTGGAGATACTTCCGAAGACTTCATGTTTGACATGAACAATTCAAGAAGATCTGATCTACCTACCAAGCAAGCAAGACCAAGTGCTAATCGAGATAAAGAACATCATGGGCTTTGGAGCAACTCTTCCAGGGAAGCTTGGTTACATGGGAAGCCAAAGGCAGATTATTCTGCTGGAAACCTGACTTCTTTTGAGAAGGAAATGGATCCAAAAGGCCTATATTACGAGAGAGTATCTGATGGAAGTGCATCCTCAGACCTTTCAGGGACAAGCCCCAAGAAGCCTAATTTGGATTTGGAGTTTAGCTTAGGCCAGCCTGCACTTTGA 1215 0.4593 MELFPAQPDLSLQISPPNSKPTSTSWRREEGEVDLGFWKRALDSRNSLSLSSSMPKPKITDHHHNHNNSSDLSLFSSNDIPTTRRSSSSSSSSHFSNNNNSNLNSFHNHHHHHHHLLQNGNNIHYSHRHQQQHQHSVLLQHHQSLGQDLGFLRPIRGIPLYQNPPHSIPFALEASNYSTTPTVPPSISNMTKTTSSPFQSHQGLMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSEDFMFDMNNSRRSDLPTKQARPSANRDKEHHGLWSNSSREAWLHGKPKADYSAGNLTSFEKEMDPKGLYYERVSDGSASSDLSGTSPKKPNLDLEFSLGQPAL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1354 404 FunFam Myb family transcription factor 220 278 - -
Dere09g1354 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 222 275 IPR006447 GO:0003677
Dere09g1354 404 MobiDBLite consensus disorder prediction 69 105 - -
Dere09g1354 404 Pfam Myb-like DNA-binding domain 223 274 IPR001005 -
Dere09g1354 404 MobiDBLite consensus disorder prediction 280 340 - -
Dere09g1354 404 MobiDBLite consensus disorder prediction 280 321 - -
Dere09g1354 404 Gene3D - 221 278 - -
Dere09g1354 404 MobiDBLite consensus disorder prediction 373 404 - -
Dere09g1354 404 SUPERFAMILY Homeodomain-like 219 275 IPR009057 -
Dere09g1354 404 MobiDBLite consensus disorder prediction 322 336 - -
Dere09g1354 404 MobiDBLite consensus disorder prediction 46 115 - -
Dere09g1354 404 MobiDBLite consensus disorder prediction 1 30 - -
Dere09g1354 404 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 71 402 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1354 Dere-ChrDere09 17581451 17586140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1354 140 404 G2-like Transcription Factor Family AT4G17695 45.714 3.39e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere09g1354 Myb_DNA-binding 2e-05 CL0123