Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1329 ATGGCAGCTTGCACAGTGTACACAACACAATCTCTCAACACAAATTGCTCCTTGTCAACCCCATCAAAAACCCACTTGGGATTCCACCAAAAACAGGTACTTTTCTACACTACCACCACAATCAAGAGAAGCAGAGGCAGCAAAAGTAGCAGCAGCAGAAGCAGCAGGCCATGTGTGATAACATGTGCTGCAGGTGACTCACAGACAGTGGTGATTGGTCTAGCAGCAGACTCAGGATGTGGGAAGAGCACCTTCATGAGGAGGCTGACCAGTGTGTTTGGAGGCACTGCAGAGCCACCAAAGGGAGGGAACCCAGATTCCAACACTCTCATAAGTGACACAACCACTGTGATATGCTTGGATGACTACCACTCTTTGGATAGGACAGGGAGGAAGGAGAAGGGGGTCACAGCACTTGACCCAAGAGCCAACGATTTTGATCTCATGTATGAACAAGTTAAGGCCATCAAGGATGGTATTGCTGTCCAGAAACCCATTTACAACCATGTCACTGGTCTCTTGGATCCCCCTGAGCTCATCAAACCCCCCAAAATCTTGGTCATTGAGGGTTTGCACCCAATGTTTGATCCTCGGGTCAGAGAACTCCTGGACTTTAGCATCTACTTAGACATCAGCAATGAGGTGAAATTCGCCTGGAAAATTCAGAGAGACATGGCAGAACGTGGGCATAGCCTTGAAAGCATCAAAGCTAGCATTGAAGCAAGGAAACCCGATTTTGATGCTTATATTGATCCTCAAAAGCAATATGCAGATGCAGTGATAGAAGTTTTACCAACCCAACTCATTCCAGACGATAATGAAGGAAAGATATTAAGAGTGAGGTTGATACAGAAAGAAGGGGTCAAGCATTTTAGCCCTGTTTACTTGTTTGATGAAGGTTCTACCATTTCCTGGATTCCTTGTGGAAGGAAGCTTACTTGCTCTTACCCTGGCATCAAATTCTTCTATGGACCTGAAAGTTACTACGGTCATGAGGTATCAGTGGTAGAAATGGATGGGCAATTTGACAGACTAGATGAGCTAATATACGTTGAAAGCCATCTGAGCAACCTCTCAACCAAGTTCTATGGAGAAGTTACACAACAAATGTTGAAGCATGCCGATTTCCCTGGCAGCAACAATGGGACAGGTCTCTTCCAAACCATAATTGGTCTGAAGATAAGAGATCTATTTGAGCAGATAGTAGCAAGCAGGTCTCAGACTCCAGCAAAAGCAGCTAAAGCTTAA 1248 0.4519 MAACTVYTTQSLNTNCSLSTPSKTHLGFHQKQVLFYTTTTIKRSRGSKSSSSRSSRPCVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKHFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPESYYGHEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIIGLKIRDLFEQIVASRSQTPAKAAKA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1329 415 FunFam Phosphoribulokinase 66 296 - -
Dere09g1329 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 340 IPR027417 -
Dere09g1329 415 Gene3D - 66 299 IPR027417 -
Dere09g1329 415 PRINTS Phosphoribulokinase family signature 220 237 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere09g1329 415 PRINTS Phosphoribulokinase family signature 76 93 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere09g1329 415 PRINTS Phosphoribulokinase family signature 185 203 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere09g1329 415 PRINTS Phosphoribulokinase family signature 238 261 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere09g1329 415 ProSitePatterns Phosphoribulokinase signature. 220 233 IPR006082 GO:0005524|GO:0005975|GO:0008974
Dere09g1329 415 PANTHER URIDINE KINASE 58 302 - -
Dere09g1329 415 CDD PRK 71 360 - -
Dere09g1329 415 Pfam Phosphoribulokinase / Uridine kinase family 71 269 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1329 Dere-ChrDere09 17355288 17359484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1329 123 297 PRT Gene Family AT3G27440 26.404 3.87e-16 77.8