Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1299 ATGGAGAAGACAAGGTCTGATCAGGTTGTCCTCTTCATCGACCACCTCAACGCTAACCCTAACCCACCCTCCATGGAAACTCATCAAAACGACAAGCCAAAAGTCACTTCCCGAGTCAAAACCCTCAACCGCCTCAGCTTCTCCAAACCCAAATCCCGCATCCTGGAACCCAACTACCCACCCTACACCAAATTCACCATCTCTGAAGACACCGACGACATCCAATCCTCCTCTCACACTTTCTCTTCCACCGACGACGACGACGACTGGAACAGCGAATTCGAAGAAGAAGAAGAGCTCGAGGAAGACGGTGCAGAACACGACCCAAAGTCCCACCAAAAAAAGAAGCGTCGTCGTCGTAAAGTCCAGTGGAAGCGCGTGGTGGAGTGGGCGTTATTCCTCATCATATTAACCGGCTTGGTCTCTTCTCTCACCATAGCTTCCGTTAAGACGAAACACTTATGGGGTTTGGAGATTTGGAAATGGTGCTTGATGGTGATGGTCACGTTCAGCGGACGCTTAGTCTCCGGGTGGTTGGTAGGTGTGTCCGCGTTCATCATAGAGCGAAACTTCATGCTCAGAGAGAAGGTATTATACTTCATCTACGGTCTCCGAAAAAGCATCAGAAACTGCATATGGTTAGCCCTCGTGTTATTCTCGTACTGGACGGTTGTCTTCGATAACGTCCAGAAGAAAAACCACAAGTTCCTCAACAAGGTGTACCAAGCACTGGTGGCTGTTCTCGTGGGGGCTATAATCTGGCTCCTGAAAATCGTGCTGGTGAAAATGCTAGCCTCCTCATTCCACGTCGCCACATACTTCGACAGAATGAAAGAGAGCGTGTTCCATCATTACATACTGGACACGCTTTCGGGGCCTCCCATGGAAGAGAATGAGGCAGTGTCGCAGCATCATCTGACGGGGTCGAAGTCCATGCCTAGCAAGTGGAAGGGGAGGAAGGCGATGAAGGACGCGAAAACTTTGTACAAGTCGACGAAATTTGGGTCGCCGTCGAGGAAGATAGATATGGAGAAGCTGAGAGAGCTGAGTATGGAGAGCACGGCGTCGGCGTGGAGCGTGAAGAGGCTGGTGAACTACGTGAGGTCGTCAGGGTTGTCGACGATTTCGAGGACTGTGGATGATTTTGGGATCAGTGAGTCTGAGATTAGTAGCGAGTGGGAGGCTAGAAGTTGTGCCCAGAGGATTTTCAAGAACGTTGCGAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGAGTTGAGATTCATACTATATTCCCACTCTTTGAAGGAGCTCTTGAAACTGGAAAGATATCCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCATATTATGAAAGAAAAGCTCTAGCACAATCACTGAATGATACCAAAACAGCAGTGCAACAGCTTCACAAACTAGCAAGCTCAGTAGTGATAGTGATAATAATCATAGTGCTCCTTCTGGTGATGGAGTTGGCTACACTTAAGGTAATACTTTTCTTCATTACACAAATAGTTCTGATTGGGGTTGCCTTCCAATCTACTTGCAAGACTGTCTTAGAAGCCATCATCTTTGTCTTCATCATGCACCCTTTTGACATTGGAGATCGCTGCGTCATTGACGGTGTTCATATGATTGTGGAAGAGATGAATATCTTGACGACAGTGTTCCTTCGATATGACAACGAGAAAATCTACTACCCTAACTCAGTTTTGCTCAGCAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGTGATGCTATTGATTTCACTATTGATGTTTCAACTCCTATGGAGACCATCATTGCACTCAAGAAGGCAATTCAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACACAGTGACAGTGAAAGAGATAGAGAATGTGGATAAGCTGAAGCTGTGTCTATGCGTTCAACACACCATCAATCATCAGAATTATGGAGAGAGAAACAGTCGGATAACAGAGCTTCTTTTGGAGCTGAAGAAGATCTTCGAGATCCATGAAGTTAAGTACCACCTTCTCCCTCAGGAGGTCCACATCACCAAGATGAACACTGAAAATGGGAAAGTTGTGTTATAA 2121 0.4616 MEKTRSDQVVLFIDHLNANPNPPSMETHQNDKPKVTSRVKTLNRLSFSKPKSRILEPNYPPYTKFTISEDTDDIQSSSHTFSSTDDDDDWNSEFEEEEELEEDGAEHDPKSHQKKKRRRRKVQWKRVVEWALFLIILTGLVSSLTIASVKTKHLWGLEIWKWCLMVMVTFSGRLVSGWLVGVSAFIIERNFMLREKVLYFIYGLRKSIRNCIWLALVLFSYWTVVFDNVQKKNHKFLNKVYQALVAVLVGAIIWLLKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEENEAVSQHHLTGSKSMPSKWKGRKAMKDAKTLYKSTKFGSPSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGISESEISSEWEARSCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASSVVIVIIIIVLLLVMELATLKVILFFITQIVLIGVAFQSTCKTVLEAIIFVFIMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNSVLLSKPISNFYRSPEMCDAIDFTIDVSTPMETIIALKKAIQMYIESKPKYWNPKHTVTVKEIENVDKLKLCLCVQHTINHQNYGERNSRITELLLELKKIFEIHEVKYHLLPQEVHITKMNTENGKVVL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1299 706 MobiDBLite consensus disorder prediction 65 81 - -
Dere09g1299 706 Pfam Mechanosensitive ion channel 481 684 IPR006685 GO:0016020|GO:0055085
Dere09g1299 706 SUPERFAMILY Sm-like ribonucleoproteins 529 587 IPR010920 -
Dere09g1299 706 Gene3D - 538 587 IPR023408 -
Dere09g1299 706 MobiDBLite consensus disorder prediction 65 116 - -
Dere09g1299 706 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 20 700 IPR016688 -
Dere09g1299 706 PIRSF Memb_At2g17000 8 704 IPR016688 -
Dere09g1299 706 MobiDBLite consensus disorder prediction 87 104 - -
Dere09g1299 706 FunFam Predicted mechanosensitive ion channel 538 587 - -
Dere09g1299 706 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1299 Dere-ChrDere09 16987704 16992689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1299 13 698 Mechanosensitive Ion Channel Family AT5G12080 44.239 0.0 597