Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1295 ATGACCAAACCCACCACGATAACCCACCCTCAGGAGTTCCTCATCCAGACACCTTATTTTGGTACAAGAATAAAGATGTATCTTGTTACAGAGGCTTCGAGCTTTGGAACCAATAGCAGCAGCAAGTCATCCCTCAAGCAAGGTTGCTTCTCCCTCAAGATCTTTACTCTCAAGGGGCCATGGAGGACTGTTCGCACATGCAGTGCAGGACTTGCAGCAAAAGTTGTGGCTATGACTGCCAAACCCATGTCAAGAGCACTTGGGTTCCAGCTTCCAAGCATCGCGAGCGACAACAGCAGTAGTAGCTACAACATCAACTTCAACTTCACGGAGACAACAATCCCAAGAGTGATAAGCTCTCCTGCTGAGTTCCGGTGCGTGCAGGTTAGCTCAATGGACGATGCTGACAAGCAATATGCATACCAGACGACCATAAACATAGGAGGCCATGTTTTCAGAGGAATTATCTATGATCAAGGCCCTAATACCAGTTACATGTCCACTGGTGACACCTTTTCTGGTGGAGGAGTTCAGTCGTTCAATCTCATTGCCGCTACCGGTGCCTTTGCTCTACCGACAACTATAACAAGTGGTGGTGCCGCTGCCGTGGCTTCGAGCACAACAAGCAAAAAGGCTGCGTTGTGA 645 0.4884 MTKPTTITHPQEFLIQTPYFGTRIKMYLVTEASSFGTNSSSKSSLKQGCFSLKIFTLKGPWRTVRTCSAGLAAKVVAMTAKPMSRALGFQLPSIASDNSSSSYNINFNFTETTIPRVISSPAEFRCVQVSSMDDADKQYAYQTTINIGGHVFRGIIYDQGPNTSYMSTGDTFSGGGVQSFNLIAATGAFALPTTITSGGAAAVASSTTSKKAAL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1295 214 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 96 209 IPR007818 GO:0003700|GO:0006355
Dere09g1295 214 Pfam Domain of unknown function (DUF702) 98 162 - -
Dere09g1295 214 NCBIfam LRP1 C-terminal domain 114 161 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1295 Dere-ChrDere09 16951017 16951848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1295 114 197 C2H2 Transcription Factor Family AT1G19790 45.349 2.02e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere09g1295 DUF702 2.5e-22 No_clan