Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1293 ATGGCTGTAAATCTCACGGAAGGGGCAATAACGATGATGTGCAGGGACGATTTCTCTTCGGAGGACCTGAAGCCAGTGCTCCAAGTAATCGACTTGAAGTTGGTTCAGTCGCAGCAGAATAGCGCCACCGAGAGGTACAGGCTTGTGCTCTCTGATGGTTCGCACTACCAGCAAGGGATGCTCGCTACTCAGAAGAACGAGTTGGTCCATGCTGGGAGGTTGCAGAAGGGCTCCGTTGTTAAGCTGATTCAGTTTATCTGTAATGTTGTCCAGAACCGCAAGATTATCATCATCATTGAGCTAGATATGGTACTTGACAAATGTGATCTCATTGGAGAACCTGCCCCAGCACCAAGAACTGTACCTACACCATCTTCCACTGTTCAGTCTGGAGCCAGCACCGGAACTCCCCAGTCCTTGACCAGTAGCTCACCTGCAGGTAGTATGCTTGCTCGATCACAAGTGGTTGGACCATCTCTGGATCATCCAAAAATCAATCATGCTGTAAATAGTGCTTATTCTACTGGTTCTGACACTGCAAGATATAGTGCTTCAAATGTTCCTCCTCATTTGCCTAAAGCAGAGCCTGGAGTTTCTTTACCTAAGTCAGAGCCATTCAGTGGGTCCTATCGTGAACAGAATGTGGGCTTCCGGAATCCTCAACCAGAAGCTTCAAGACCTCTACAAAATATTTATTCCCGCCCCCCACAACCCATGTATAGACACCCATCTCCAACTTATAGCAATAGAGGACCAATAGCCAGAAATGAAGCTCCCCCAAGGATAATTCCAATAGCTGCATTGAATCCGTACCAAAATATGTGGACAATTAAGGCTAGAGTAACAGCAAGGGGAGGCCTGAAGCACTACAACAATGCCCGAGGTGATGGAAAAGTATTTTCTTTTGATCTTCTTGATTCTAATGGTGGGGAAATTCGTGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAATCAAATTGAAGTTGGTAAAGTCTATCTGATTTCCAGGGGAAGTATAAAGCCAGCACAAAAGAATTTTAATCACCTCTCTAATGATCAAGAACTGACTCTTGATGTTACAACAGTTATACAGCCTTGCCTTGATGACGACAAGTCAATTCCAATGCATCTGTTTAATTTCCGTCCTATTAGTGAAGTTGAAAGTATGGAAAATTCGAGTGTTGTGGATGTGATTGGTGTGGTATTTTCTATTAGTCCTACAATGTCAATCATGAGAAAGAATGGAACTGAAACTCAGAAGAGAGCCCTCCAGTTGAAAGACATGTCTGGCTGCAGCGTTGAGTTAACCTTATGGGGAGATTTTTGTAATGCTGAAGGACAGAGGTTGCAGAGTATTTGCGATTCTGGAGTATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCTGTGGGGACCATACTCACTAGTCAGCTATTTATAGAGCCTGATTTTCCTGAGGCTTACAGGCTGAAAGAATGGTTTGACAAGGAAGGGAGGAACATTCCAACTATTTCTATTTCCAAAGAATCATTCAATGCCGGTAAGACTGATACAAGGAAGACTATATCTCAAATTAAAGATGAAAAGTTGGGGACTTCAGAGAAACCTGATTGGATAAGTGTATGTGCTAGTGTTTCATTCATTAAGGTTGATTCTTTCTGCTATACAGCTTGTCCCATCATGATAGGGGATAGGAAATGTAGCAAAAAAGTGTCCAATAATGGAGATGGGAAATGGCGGTGTGATAGATGTGACCAGTATATTGATGCATGTGATTATAGGTATATATTGCAATTCCAAATACAGGACCACACTGGCCTAACATGGGTTACTGCTTTTCAGGAGTGTGGTGAGGAGATCATGGGCTTACCTGCCAAAGATCTGTATTATATGAAATATGAAGAGCAAGATGATGAAAGATTTGCTGAAGTCATCCGCAAGGTTCTCTTTACTAAATACATATTCAAGTTAAAAGTAAAGGAGGAGATATTTGGCGATGAACAGCGTGTAAAGTCAACAGTAGTGAAAGCAGAGAAGGTGAACTTTTCTTCTGAATCTAGATTTCTTTTGGATATGATTGATAAGCTTAAAGCTGAGAAGGCAGAAGGTATGAATCCTAACTCTGTAATCAATAATGCTGGATTGCGGGGTGTTGGAACTGGACTAGCTGTGCCACAAGTTTACAACAGTAATGTTAGTAGAGAGTATGGGATGCCAGCAAATCAAGTGGGTCAGCAAGGACACCAATATAGTTCTTACACTGCTGCTGGGTCTTCCAGTGCATTTATGCTGTCATCTTGCAACAACTGTGGAGGCTCTGGCCATAGCTCTATGCTTTGCCCAAACATTACGAGTGTACAACGACAGTCTGTGGGAGGAGGGGCCTTTGCTAATAGGGTATCTTCTGGGGTTGGTGTTGGTGTTGCTCCTGGTGAATGCTTTAAATGCCATCAAACTGGCCACTGGGCAAGAGACTGCCCTGGTCTCAATGCAGCAGCCCCTCCAGCTTATGGAAGCAGTAGCGTCATGCAGGGGAGACATGGGATTGTTCAAAGGCAACAGCTTGGTGGATTTTGA 2601 0.4348 MAVNLTEGAITMMCRDDFSSEDLKPVLQVIDLKLVQSQQNSATERYRLVLSDGSHYQQGMLATQKNELVHAGRLQKGSVVKLIQFICNVVQNRKIIIIIELDMVLDKCDLIGEPAPAPRTVPTPSSTVQSGASTGTPQSLTSSSPAGSMLARSQVVGPSLDHPKINHAVNSAYSTGSDTARYSASNVPPHLPKAEPGVSLPKSEPFSGSYREQNVGFRNPQPEASRPLQNIYSRPPQPMYRHPSPTYSNRGPIARNEAPPRIIPIAALNPYQNMWTIKARVTARGGLKHYNNARGDGKVFSFDLLDSNGGEIRATCFNAVADQFYNQIEVGKVYLISRGSIKPAQKNFNHLSNDQELTLDVTTVIQPCLDDDKSIPMHLFNFRPISEVESMENSSVVDVIGVVFSISPTMSIMRKNGTETQKRALQLKDMSGCSVELTLWGDFCNAEGQRLQSICDSGVFPVLAVKAARVNEFNGKAVGTILTSQLFIEPDFPEAYRLKEWFDKEGRNIPTISISKESFNAGKTDTRKTISQIKDEKLGTSEKPDWISVCASVSFIKVDSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQYIDACDYRYILQFQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEEQDDERFAEVIRKVLFTKYIFKLKVKEEIFGDEQRVKSTVVKAEKVNFSSESRFLLDMIDKLKAEKAEGMNPNSVINNAGLRGVGTGLAVPQVYNSNVSREYGMPANQVGQQGHQYSSYTAAGSSSAFMLSSCNNCGGSGHSSMLCPNITSVQRQSVGGGAFANRVSSGVGVGVAPGECFKCHQTGHWARDCPGLNAAAPPAYGSSSVMQGRHGIVQRQQLGGF 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1293 866 FunFam Replication protein A subunit 513 704 - -
Dere09g1293 866 MobiDBLite consensus disorder prediction 116 153 - -
Dere09g1293 866 NCBIfam replication factor-a protein 1 (rpa1) 238 703 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere09g1293 866 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dere09g1293 866 SMART c2hcfinal6 820 836 IPR001878 GO:0003676|GO:0008270
Dere09g1293 866 SMART c2hcfinal6 774 790 IPR001878 GO:0003676|GO:0008270
Dere09g1293 866 FunFam Replication protein A subunit 374 512 - -
Dere09g1293 866 Gene3D - 374 512 IPR012340 -
Dere09g1293 866 SUPERFAMILY Nucleic acid-binding proteins 526 704 IPR012340 -
Dere09g1293 866 Pfam Zinc knuckle 820 835 IPR001878 GO:0003676|GO:0008270
Dere09g1293 866 Pfam Replication protein A OB domain 385 488 IPR031657 -
Dere09g1293 866 SUPERFAMILY Nucleic acid-binding proteins 380 509 IPR012340 -
Dere09g1293 866 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dere09g1293 866 CDD RPA1_DBD_B 396 503 - -
Dere09g1293 866 ProSiteProfiles Zinc finger CCHC-type profile. 821 835 IPR001878 GO:0003676|GO:0008270
Dere09g1293 866 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Dere09g1293 866 Gene3D - 261 371 IPR012340 -
Dere09g1293 866 Gene3D - 771 850 - -
Dere09g1293 866 MobiDBLite consensus disorder prediction 206 232 - -
Dere09g1293 866 Pfam Replication factor-A C terminal domain 546 697 IPR013955 -
Dere09g1293 866 CDD RPA1_DBD_C 530 703 IPR047192 -
Dere09g1293 866 Gene3D - 3 117 IPR012340 -
Dere09g1293 866 CDD RPA1_DBD_A 264 367 - -
Dere09g1293 866 MobiDBLite consensus disorder prediction 179 240 - -
Dere09g1293 866 Pfam OB-fold nucleic acid binding domain 275 362 IPR004365 GO:0003676
Dere09g1293 866 FunFam Replication protein A subunit 4 118 - -
Dere09g1293 866 Gene3D - 513 704 IPR012340 -
Dere09g1293 866 SUPERFAMILY Nucleic acid-binding proteins 261 375 IPR012340 -
Dere09g1293 866 MobiDBLite consensus disorder prediction 122 150 - -
Dere09g1293 866 FunFam Replication protein A subunit 261 371 - -
Dere09g1293 866 PANTHER REPLICATION FACTOR A 1, RFA1 275 696 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere09g1293 866 SUPERFAMILY Retrovirus zinc finger-like domains 813 838 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1293 Dere-ChrDere09 16909806 16913313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1293 1 801 Core DNA Replication Machinery Family AT5G45400 52.742 0.0 863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1293 09 16909806 16913313 Dere09g1293 09 16909806 16913313 ECH