Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1289 ATGGAGTTCAGTCAGCATGAGAGCATGTTAGTTAGAGATGTCTGTGCAAATGGAAGCTGCATGAGAGCAACAGAAGTTGAGGTGAAGCTTGATGAAGGGAATATTCAAGAGGCAGAGTCTTCATTGCGAGAAGGGTTATCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGAAATGTGGAAGGTGCTCTCCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAACGATTGCAACCTTGCCTTTCTGAAAAACCATCAACCAAGAAAGGGCGTGCTCGTACTGAACCACCTCCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAGGTCTCTACAAACTCTGGGGAGATTAACTGAAGCTGCAAATGAATGCAAAAGTGTGCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGACAATAAATTGCAAGAAATAGTCAGTCATGCTGTTGAGCTCCTTCCAGAGCTATGGACACAAGCTGGTTGCTATCATGAGGCTATATTTGCTTATAGGCGTGCTCTTCTCAGTCAATGGAACCTCAATAGTGATTGCTGTGCTAGAATCCAGAAAAGTTTTGTTGTGTTTTTGCTGTACAGTGGGGTCGAGGCTAGTCCACCCAGTTTAGCAGTTCAGATAGATGGGTCTTTTGTACCTAAAAATAATTTGGAAGAGGCAATTCTGCTCCTAATGATTCTTGTCAGAAAATTTTGCCTTGGTAAGACCAAATGGGACCCTTCAGTGATGGAGCACCTGACATTTGCACTTTCTGTATGTGGCCAATCATCAGTTTTGGCAAAACAACTTGAAGAGTTAATGCCTGGAGTGTATAATCGCGTTGACCGTTGGAATTCTTTAGCTTTATGTCATAATGGAGCTGGACAAAAGGAAAGTGTTTGGAATCTGCTACGGCGGTCTTTGCACAAACATGAACGACCAGATGACCTTATGACATTGCTATTGGCTGCCAGGATCTGCAGTGAGGATCCTCAACTTGCTGCTGAGGGAGTGATGTATGCACAGAGGGCAATCACAAATGCTCATGGTGCAAACGAGCATCTTAAAGGTGTGGGTCTTCGAATGCTGGGACTTTGTCTGGGAATGCAAGCTAAGGTTGCTTCCTCTGATGTTGAGAGGTCTCATCTTCAGTCCAAAGCTTTGCAGTCATTGGAGGAGGCAGCTGGATTGGAGCAAAAAAATTCTGATCTGACTTTTGAGTTGGCTGTTCAGTATGCCGAGCTCCGAAATTTGACTGCTGCTTTGTGTTATGCAAAGAAGTTCTTTGATGAAACAGGTGGTTCTATATTGAAAGGATGGAGAATGCTTGTTCTGATTTTGTCTGCTCAACAAAGATTTTCAGAGGCTGAGGTGGTAATAGACGCAGCTCTAGATCAGACTCCAAAATGGGAGCAGGGGCCTCTGCTTAGGCTGAAAGCAAAGCTGAAGATCTCCCAGTCGCAGCCCATGGATGCTATTGAAACTTATAGGTACCTCCTTGCGTTGGTTCAAGCCCAGAGAAAATCCTTTGGTCCGCTCATGAGTTGTTCACAGGTGGATGATGGTAAAGTTAATGAATTTGAGATTTGGCATGGTCTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAAGATGCTGAAATATGTTTGCAAAAGGCCCAAGAGTCAAAGCGGTACTCTGCAGCATCGATGCACACCAAAGGTGTAATATTTGAAGGACGAAGGGAAGATCAAGCTGCTCTTGGTGCTTTCTTTAACGCTTTCATACTCAATCCAAGCTATGTTCCAAGCAAGATCTTGGCGGGTGCTCTGATGCTGAAACTCGGTTCAAAAGGTTTCCCTGTGGCAAGGAGCTTACTTTCTGATGCTCTTAGGATAGACCCCACTAACCATAAGGCTTGGTATTATATGGGTTTGGTTCACAAAGATGATGGCCGAATGAGTGACGCTGCTGACTGCTTCCAGGCAGCTTCCATGCTCGAAGAATCAGACCCGATTGAAAGTTTCAGCTCTGTTCTTTGA 2085 0.4436 MEFSQHESMLVRDVCANGSCMRATEVEVKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCLSEKPSTKKGRARTEPPPSVSQHAASLVLEAIYLKARSLQTLGRLTEAANECKSVLDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWTQAGCYHEAIFAYRRALLSQWNLNSDCCARIQKSFVVFLLYSGVEASPPSLAVQIDGSFVPKNNLEEAILLLMILVRKFCLGKTKWDPSVMEHLTFALSVCGQSSVLAKQLEELMPGVYNRVDRWNSLALCHNGAGQKESVWNLLRRSLHKHERPDDLMTLLLAARICSEDPQLAAEGVMYAQRAITNAHGANEHLKGVGLRMLGLCLGMQAKVASSDVERSHLQSKALQSLEEAAGLEQKNSDLTFELAVQYAELRNLTAALCYAKKFFDETGGSILKGWRMLVLILSAQQRFSEAEVVIDAALDQTPKWEQGPLLRLKAKLKISQSQPMDAIETYRYLLALVQAQRKSFGPLMSCSQVDDGKVNEFEIWHGLANLYASLSHWKDAEICLQKAQESKRYSAASMHTKGVIFEGRREDQAALGAFFNAFILNPSYVPSKILAGALMLKLGSKGFPVARSLLSDALRIDPTNHKAWYYMGLVHKDDGRMSDAADCFQAASMLEESDPIESFSSVL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1289 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Dere09g1289 694 SUPERFAMILY TPR-like 544 678 IPR011990 GO:0005515
Dere09g1289 694 Gene3D Tetratricopeptide repeat domain 243 531 IPR011990 GO:0005515
Dere09g1289 694 Gene3D Tetratricopeptide repeat domain 23 211 IPR011990 GO:0005515
Dere09g1289 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Dere09g1289 694 Gene3D Tetratricopeptide repeat domain 538 687 IPR011990 GO:0005515
Dere09g1289 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Dere09g1289 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Dere09g1289 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Dere09g1289 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Dere09g1289 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Dere09g1289 694 SUPERFAMILY TPR-like 118 501 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1289 Dere-ChrDere09 16847791 16851718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1289 2 694 Calmodulin-binding Proteins AT2G43040 72.493 0.0 1006