Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1281 ATGGCGGACGACGAACGTCCCCTCTTCACTGACAAGTTCTCCGTCTTGCTAATCGCCATGGGCTCAGCCGCCTTCGTCGTCACAATGTACCATCTCATCGCCGTTTGCCTGTGCAGCCCCCAGTTCACTGACCCAAACCCAGACCAGCCGCCCCACCGGAATGTCTCCGTCGCCGGGGAAACTCCGAGCTTCAGCGAGACCTCGGTGGCGCATCTGATTCCGGCCCACAAGTACAAGAAGAAGATCGACGATGACGTGGCAGGTGATCGCGAGGATAACGACGATGCGACTTGCGCGGTGTGCCTGGGAGATTTCGAGGACGGCGAGGAGGTGCGAACGTTGCCGGAGTGCGCGCACTCGTTCCACGTGCCCTGCATAGACATGTGGCTCTACTCTCATCCCAATTGCCCCGTCTGCCGCGCCGATGCCACGCCGTCTCCCGCGGTGCTCCGCCTGGCGACGGAGCCATTTCCCGGCGACGCGAACGCGCACGAGCACCGTGTAGATATTGTGCAAAATGCTTTGGTCCAGAGTGGTAGAGTTTGA 546 0.6081 MADDERPLFTDKFSVLLIAMGSAAFVVTMYHLIAVCLCSPQFTDPNPDQPPHRNVSVAGETPSFSETSVAHLIPAHKYKKKIDDDVAGDREDNDDATCAVCLGDFEDGEEVRTLPECAHSFHVPCIDMWLYSHPNCPVCRADATPSPAVLRLATEPFPGDANAHEHRVDIVQNALVQSGRV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1281 181 SMART ring_2 98 139 IPR001841 -
Dere09g1281 181 CDD RING-H2_EL5-like 98 140 - -
Dere09g1281 181 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 145 IPR044675 -
Dere09g1281 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 147 IPR013083 -
Dere09g1281 181 Pfam Ring finger domain 97 140 IPR001841 -
Dere09g1281 181 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Dere09g1281 181 SUPERFAMILY RING/U-box 89 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1281 Dere-ChrDere09 16732875 16733420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1281 91 145 C3H Transcription Factor Family AT2G17450 60.000 3.17e-19 79.0