Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1264 ATGGGATCCAGTAGTAGCAAAGCCAATTCTTCCTGCAATTCGTCGTTGACCTCGTCGTCTTCGGGCAGTTTCCGTAAGGGTCGATCTAAAGGGCATAGGGGTTTTCAGTCCTATTGTTTAGGAACAACGTCTGGATCTCATGACAGTGATAATGACGACCAGGTTTGTGATCAGAATAAAGAAAATGATAATAATGTTACATACACTAATGGTAGTGAAGCAGACTCAGATGAGATGACAACAGAGTCCTTTAGAAAGATTAAATCTGATGAAATGCCTCGTATCCCGCCTAACATCCACCTTGATGAGTGGAGCCAAACAAACATTTCCAATACTGCATCTAGAACTGGTAGCAGTTCTGACCGTGCAGCTTCAGCTCAGTCATTGAACCCTTCAAGTCGATTCCTTTCTCGGTTTAGCCTCATTCCTGGTAACATTAGCTTCAGACTAAGCAGAACCACAAGTTTGGGGTCATCACGGCCTTGCCCTGTTTCTTCTGCAAGTCTCACCATATTCAACAATGAAGATGAACTTAATCTGCATCCAGAACACACTGGTAACTTGGCTAATCAAAATGAAGCTCGACAATGCAGTGACTTGCGTCCTGCATCACATTGCTATGAAGATACTTCTATTAATTTAAGGTCTAATGCCCCAGCATCAGGTTCCTATGGCAACTCACGAAACAATCCAACAAATTCTCCTGTGCAGGATTTTATTAGAGCTGGAGATGATACAAGAGATGGGCTGAATCTTAATTTATTTTCTCCAAGAATTCATGCTGGAACTGAAAATGCTGAGACAAGACATAATGATCGCCGAATTGGACATCGAGAACCTGTTGAGCGGAATGTGCGCTTTAGTCGTACTCTCAGTGTTGGAAGGCTTCGTGATAGGGTTCTTCGTCGATCAACGATATCAGACTTCACCTTTTGCCCTCTGCAACAAGAGAGCAATGGGAGAGATGCTAGCCAAGATATTGGAAGACAAGCTGGGGAGAGAGATTCTAGAGTATCCCCATCTGATAGTAACACTTTAAGTTCTCCTTCTACATCTGGATATCGTCCATCCAGTATTTCTAGCTCCTTGTTTAGCATCCAAGATTATGAGGTTGAATCGTCACGATCAAGAGAAGCTAGGTATCATGATCTACTAGATAACAGATCCAATTTCCTAGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGTAGCCAATTTGAAAACCTGTCTGGGCATGACAGGTCATGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTAGCAGTCGTGATGCCAATTCAAATGATGATACTGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTGGAGTCATTGCCTGTCAAATTATACACAAAGTTGCATAAACATCAAGAGGATGCAGCTCAATGCTATATATGCCTTGTGGAGTACGAAGATGGAGACAGCATGCGAGTACTACCTTGTCATCATGAATTTCATAGAACATGCATTGACAAGTGGCTAAAGGAAATTCACAGGGTATGCCCACTATGCCGGGGAGACATCTGCATAGCTGATTCAATGCCACCGGAGAACTGA 1722 0.4297 MGSSSSKANSSCNSSLTSSSSGSFRKGRSKGHRGFQSYCLGTTSGSHDSDNDDQVCDQNKENDNNVTYTNGSEADSDEMTTESFRKIKSDEMPRIPPNIHLDEWSQTNISNTASRTGSSSDRAASAQSLNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSASLTIFNNEDELNLHPEHTGNLANQNEARQCSDLRPASHCYEDTSINLRSNAPASGSYGNSRNNPTNSPVQDFIRAGDDTRDGLNLNLFSPRIHAGTENAETRHNDRRIGHREPVERNVRFSRTLSVGRLRDRVLRRSTISDFTFCPLQQESNGRDASQDIGRQAGERDSRVSPSDSNTLSSPSTSGYRPSSISSSLFSIQDYEVESSRSREARYHDLLDNRSNFLERRRRIRSQVRALQRLGSQFENLSGHDRSCILSGQHRNGHCTCRISSRDANSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICIADSMPPEN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1264 573 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 571 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 317 359 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 337 359 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 217 243 - -
Dere09g1264 573 FunFam Putative RING zinc finger domain superfamily protein 487 565 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 101 129 - -
Dere09g1264 573 Pfam Ring finger domain 517 560 IPR001841 -
Dere09g1264 573 SUPERFAMILY RING/U-box 496 568 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 78 97 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 1 129 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 217 239 - -
Dere09g1264 573 MobiDBLite consensus disorder prediction 60 77 - -
Dere09g1264 573 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Dere09g1264 573 MobiDBLite consensus disorder prediction 1 25 - -
Dere09g1264 573 SMART ring_2 518 559 IPR001841 -
Dere09g1264 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 564 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1264 Dere-ChrDere09 16597955 16602071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1264 226 567 C3H Transcription Factor Family AT5G45290 58.028 5.31e-114 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1264 09 16597955 16602071 Dere09g1264 09 16597955 16602071 ECH