Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1244 ATGGCGGATCGGTTAACGCGTATAGCCATCGTGAGCAATGATAGGTGCAAGCCTAAAAAGTGCCGCCAAGAGTGCAAGAAGAGTTGCCCTGTTGTGAGAACTGGTAGATTGTGTATTGAGGTTACTCCTCAATCTAAGATTGCTTTCATATCCGAGGAATTGTGCATTGGGTGTGGTATTTGTGTCAAGAAATGCCCATTTGAAGCCATCCAGATTATCAACTTGCCAAAGGACCTGGACAAAGACACAACTCACAGATATGGTCCTAACACTTTTAAATTGCATAGGTTGCCAGTACCAAGGCCAGGGCAAGTTCTTGGGTTGGTCGGAACAAATGGCATTGGAAAGTCCACTGCCCTTAAAGTTTTGGCTGGCAAATTGAAACCAAACTTGGGCCGTTTCAATAACCCACCTGATTGGCAGGAAATTTTAACCTACTTTCGAGGATCTGAACTGCAAAACTATTTTACTCGCATCCTAGAGGATGATTTAAAGGCCATTATCAAGCCCCAGTATGTTGATCACATTCCAAAAGCTGTACAAGGGAATGTAGGGCAGGTGCTGGACCAGAAAGATGAGAGAGATATGAAGAAAGAGCTTTGTGCTGATCTTGACCTAAACCAGGTTATAGATCGTAATGTTGGTGATCTTTCAGGTGGGGAGCTCCAAAGGTTTGCCATTGCAGTTGTTGCCATCCAGAATGCTGAAATATACATGTTTGATGAACCTTCTAGTTATCTTGATGTAAAACAGAGGCTGAAAGCCGCCCAAGTAGTTCGGTCTTTGCTCAGGCCTAATAGCTATGTAATTGTTGTAGAGCACGATCTTAGTGTCTTGGACTACTTATCAGACTTTATCTGCTGTTTATATGGCAAGCCTGGTGCATATGGAGTTGTAACACTTCCTTTCTCAGTCAGAGAAGGAATTAACATCTTCTTGGCTGGCTTTGTTCCAACAGAAAATCTAAGGTTCCGGGATGATTCTCTTACCTTCAAGGTTGCCGAGACTCCACAAGAGAGTGCCGAGGAGGCCCAAACATACGCTCGATACAAATACCCGACTATGACTAAAACCCAAGGAAATTTCAAGCTTCGTGTAGTTGAAGGAGAATTTACCGATTCTCAGATTATAGTGATGTTGGGTGAGAATGGGACAGGAAAGACAACTTTTATTCGTATGCTGGCTGGTTTATTGAAACCGGACACTATAGAAGGTGGCTCTGATTCAGAGATGCCTGAGTTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCGAAGTTCCAATCAACTGTCAGACATTTGCTCCATCAAAAAATACGTGATGCATACACACACCCTCAGTTTGTCTCAGATGTGATGAAGCCACTTCTTATTGAACAGTTAATGGACCAAGAAGTTGTGAATCTTTCTGGTGGAGAGTTACAAAGAGTTGCATTATGTCTATGTCTTGGGAAGCCTGCAGACATCTATCTGATAGACGAGCCTAGTGCATATCTTGATTCAGAGCAGCGTATTCATGCTGCCAAAGTCATTAAGAGGTTTATCCTCCATGCGAAGAAAACTGCATTCGTGGTTGAGCATGATTTCATCATGGCAACTTATCTCGCAGATAGAGTCATTGTTTATGAGGGTTCTCCATCTATTGACTGTACTGCAAATTCGCCACAATCATTGTTGACTGGGATGAACCTTTTCTTATCAAACTTTCACGAATGGAAACTCACCTGGATATCACATTTAGAAGAGATCCAACTAATTACCGCCCCAGGATCAACAAACTGGATTCAACCAAAGACAGGGAACAAAAATCGGCTGGGTCTTATTATTACCTTGATGACTGAGTTCATAATTATGGGCAGTTGCTGA 1866 0.4255 MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTPQSKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKKELCADLDLNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESAEEAQTYARYKYPTMTKTQGNFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTIEGGSDSEMPEFNVSYKPQKISPKFQSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGSPSIDCTANSPQSLLTGMNLFLSNFHEWKLTWISHLEEIQLITAPGSTNWIQPKTGNKNRLGLIITLMTEFIIMGSC 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1244 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 569 IPR003439 GO:0005524
Dere09g1244 621 Gene3D - 1 332 IPR027417 -
Dere09g1244 621 Pfam ABC transporter 367 497 IPR003439 GO:0005524
Dere09g1244 621 Gene3D - 335 576 IPR027417 -
Dere09g1244 621 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Dere09g1244 621 SUPERFAMILY 4Fe-4S ferredoxins 6 145 - -
Dere09g1244 621 Pfam ABC transporter 102 244 IPR003439 GO:0005524
Dere09g1244 621 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Dere09g1244 621 FunFam ATP-binding cassette, sub-family E, member 1 1 332 - -
Dere09g1244 621 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Dere09g1244 621 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Dere09g1244 621 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 568 IPR013283 -
Dere09g1244 621 Pfam 4Fe-4S binding domain 49 71 IPR017896 -
Dere09g1244 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 542 IPR027417 -
Dere09g1244 621 CDD ABC_RNaseL_inhibitor_domain1 78 332 IPR034348 -
Dere09g1244 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 315 IPR003439 GO:0005524
Dere09g1244 621 SMART AAA_5 102 294 IPR003593 GO:0016887
Dere09g1244 621 SMART AAA_5 373 546 IPR003593 GO:0016887
Dere09g1244 621 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Dere09g1244 621 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Dere09g1244 621 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Dere09g1244 621 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Dere09g1244 621 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Dere09g1244 621 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Dere09g1244 621 ProSitePatterns ABC transporters family signature. 469 483 IPR017871 GO:0005524|GO:0016887
Dere09g1244 621 FunFam ATP-binding cassette sub-family E member 1 334 572 - -
Dere09g1244 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1244 Dere-ChrDere09 16315505 16319684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1244 97 279 Calmodulin-binding Proteins AT2G36910 26.943 8.87e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1244 09 16315505 16319684 Dere09g1244 09 16315505 16319684 ECH