Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1220 ATGTGTCAGAGAGAGAAGAGAGGGAAGGATGTCAGAGAGAGATCGAAGAGAGAGAAGGATCTTAAAACCTTAGCCTTCCTAAAATCTCGCTGGAAATGTAGCTCTGGTGGTTGTTGGTTTGCGCATATAGTTCGACATCCTTATAACCCTTCAATTTTGATACAGGAGGTTGTGCTTTCTCATGCGTGCTTAAAATTGGAGATGAGTAATACTAAGGAGAACGAGGAAGCTGGCCAGAATGTGCCTGTGGGTGTCAATGAAAGCAAGGAATTAGTTGATGCGCAGGTTCAACTCGAAGCTTCTTCTACTCCCGTTCCAGTAGAGAAAACTTCAGATCATGTTGAAAATGTGAAGGTAGAGGAACCTTCTGGTGATAAAAATCTGGAACCAGAGGCCATTTCGGAGGGCACTCCACAAAAAGAAGTTCCAAATACTCTTCAATCCGTCCCAGCAGAAGCCAATGCTCAAGTTTTGGTTAAAACCGACTCAGAACACATATCAGATGTGAAGACTGAGGTCAAAGAATTTCCACAGACAAATACGTGCGTTGAGAGTGATGCTGTTGCTGGTGAAAAAATTGTTGATACCGCTGAAACAGTTGTGAACGTTAAGCCTGAATCTTGTGAAGTCCCTGCTAGTGAAACTTGCAATAATGGGGATTCGAAGCCCATGAGTCATAATGAACCTACTACACCTCAACCTGTTCCTGCTGATACAAAAAGTGGGATTGAGAATGGTATAAAAGTTGAGACTAAGGTTAATGATGAGCAAGCTGCCACACTTGGTGATAAAGGGAATTCAAACATTAAGCACTCGTTTTTTGATGCTGACTATGACGGGAATGAGTCAGGAACAGAAACAGAGCAGTCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTTAAACCTCCTAAGTTCTATGGAGAGGGGCTTAATTGTCTCAAGTTGTGGAGAGCAGTGACCAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACCTGCACGACTGTTTCATGGACATTTCGAGGATTTTATGAAAAGGCTCTTCTTGATTATGAAAGGCATAAAACAAAAGGCGGTGAACTTACTGTGCCTATTGCTTCTCATTCAGAGCCCATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAAGGTTGGCACTCACAACGTCTTCTTGGTAATGGTGAAGTTAGTGATCCTATTATTAAGGATAGGACTTCCATGCCTATGCAGAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCATCATACATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAGCCACAATTGGACACAGCAGTTGTTGATATTGGACCTCCTGCTGATTGGGTAAAGATCAATGTCCAGAAAACTAAAGATTGTTATGAAGTCTACGCTTTAGTTCCTGGCCTTCTACGGGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGCTTAGTCATTAGTGGTGAACCTGAGCATCCCGATAATCCTTGGGGTGTGACACCTTTCAAGAAGGTTGTCAGCTTGCCTTCAAGAATTGATCCTCACCAGACATCGGCTGTGGTAACATTGCACGGACAGCTGTTTGTCCGTGTCCCATTTGATCAATCAGAGTAG 1743 0.4337 MCQREKRGKDVRERSKREKDLKTLAFLKSRWKCSSGGCWFAHIVRHPYNPSILIQEVVLSHACLKLEMSNTKENEEAGQNVPVGVNESKELVDAQVQLEASSTPVPVEKTSDHVENVKVEEPSGDKNLEPEAISEGTPQKEVPNTLQSVPAEANAQVLVKTDSEHISDVKTEVKEFPQTNTCVESDAVAGEKIVDTAETVVNVKPESCEVPASETCNNGDSKPMSHNEPTTPQPVPADTKSGIENGIKVETKVNDEQAATLGDKGNSNIKHSFFDADYDGNESGTETEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELTVPIASHSEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRTSMPMQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKINVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFDQSE 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1220 580 MobiDBLite consensus disorder prediction 210 241 - -
Dere09g1220 580 Pfam Hsp20/alpha crystallin family 497 578 IPR002068 -
Dere09g1220 580 CDD ACD_sHsps-like 495 575 - -
Dere09g1220 580 MobiDBLite consensus disorder prediction 211 238 - -
Dere09g1220 580 SMART bright_3 287 378 IPR001606 GO:0003677
Dere09g1220 580 Gene3D - 477 580 IPR008978 -
Dere09g1220 580 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 135 579 IPR045147 GO:0006357
Dere09g1220 580 SUPERFAMILY HSP20-like chaperones 489 576 IPR008978 -
Dere09g1220 580 FunFam AT-rich interactive domain-containing protein 3 472 580 - -
Dere09g1220 580 ProSiteProfiles ARID domain profile. 286 377 IPR001606 GO:0003677
Dere09g1220 580 CDD ARID 288 373 - -
Dere09g1220 580 Gene3D - 286 383 IPR036431 GO:0003677
Dere09g1220 580 SMART ARID_2 283 373 - -
Dere09g1220 580 SUPERFAMILY ARID-like 280 390 IPR036431 GO:0003677
Dere09g1220 580 MobiDBLite consensus disorder prediction 120 142 - -
Dere09g1220 580 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 480 580 IPR002068 -
Dere09g1220 580 Pfam ARID/BRIGHT DNA binding domain 289 373 IPR001606 GO:0003677
Dere09g1220 580 FunFam AT-rich interactive domain-containing protein 3 286 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1220 Dere-ChrDere09 16066565 16074120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1220 281 578 ARID Transcription Factor Family AT1G76510 63.696 6.82e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere09g1220 HSP20 9.3e-06 CL0190