Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1201 ATGACTCGAACGATCAGAATTCTCAATTCTCTAGACCACACCACCGTGGCGGCTGCGCCGCCGCCGGAGGCCGTGTCGATGGAATCGGACTTCGTGGTGATTCTGGCGGCGCTGCTCTGCGCGTTGATATGCGTGGTGGGGCTGATTGCTGTCGCACGCTGTGCGTGGCTCCGGCGGGGATCCGGGCCCGGGGGCTCACCGGCGCAGGCTTTGGCGAACAAAGGTCTGAAGAAGAAGGTGCTCCAATCGCTTCCGAGATTCACCTACGTTGACGGGAATCCGAATAAGTGGGTGGCCACGTCGGAGTGCGCGATTTGCTTGGCGGAGTTCGGCGAGGGCGACGAGATCCGGGTGCTTCCTCAGTGCGGGCACGGGTTCCACGTGGCGTGCATCGACACATGGCTTGGGTCCCACTCTTCGTGCCCTTCTTGCCGGCAGATTCTTGCGGTGGCTAGGTGCCAGAAGTGCGGCCAGTACCCGGCGGTCGGCGGCAGAACATCCGCCGGAGCCACCAGCGGCTCTGTTTGTGAACCGGAGTTGAAGTCTAGAGAAGATGACAATGCCTCTTCCACTGCTGCTAACAACAACGATAATAATCATAATAATATTAGCAGCGGTTTTAATTATTTCTTGCCTTAA 639 0.5853 MTRTIRILNSLDHTTVAAAPPPEAVSMESDFVVILAALLCALICVVGLIAVARCAWLRRGSGPGGSPAQALANKGLKKKVLQSLPRFTYVDGNPNKWVATSECAICLAEFGEGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVARCQKCGQYPAVGGRTSAGATSGSVCEPELKSREDDNASSTAANNNDNNHNNISSGFNYFLP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1201 212 CDD RING-H2_EL5-like 102 145 - -
Dere09g1201 212 MobiDBLite consensus disorder prediction 164 199 - -
Dere09g1201 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Dere09g1201 212 SMART FANCL_C_2 99 153 - -
Dere09g1201 212 Pfam Ring finger domain 102 145 IPR001841 -
Dere09g1201 212 SUPERFAMILY RING/U-box 82 150 - -
Dere09g1201 212 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 157 - -
Dere09g1201 212 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Dere09g1201 212 SMART ring_2 103 144 IPR001841 -
Dere09g1201 212 FunFam E3 ubiquitin-protein ligase ATL6 66 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1201 Dere-ChrDere09 15784820 15785458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1201 1 156 C3H Transcription Factor Family AT1G76410 61.585 1.91e-61 188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1201 09 15784820 15785458 Dere13g0854 13 10776687 10777307 CCT
Dere09g1201 09 15784820 15785458 Dere09g1201 09 15784820 15785458 ECH