LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g1196	ATGAAGTTTCGATTTTTTTGCATTTCATGCCTTATAGTCATATTGCTCATCATCTTGTTTTCGAGCTTAACCGGTGATGTATCGGTATCAAAGTCAGAGAGCTCCCAAGTCTCTCTTGTCGGTGATCATGAGGAAGACTTCAAGGGCTTAGCTCTACCTTCAAGCCGATCTCTTCTGTCTCATCCATCTAAGCCTAGAACAGCACTAATTGCTGCCCCAGATCAAAATGGGACTATACATTTGGTGGAGAGTGGTTCCATGAGGATAGTATGGTCATTTCCAACAGGATCGCCAATTTACGGTTCATATCATGCTCCTCTCAAACAGGATAATGATAAAGAAAATATATCTGGACCAATAAGCGAGTTCATAGAAGTTGGAGATGACTGGGGGTTATATCAAAGAAAGCCCTTTGGTAAAATGAGGCTCTTAACATCTATTGAAGATGTTGTTAGAGCTACACCTAAAATATCAAATGATGGAGTTGTTATGCTTGGAGCTAAAAGAATCACCGTTTTTGAAGTTGATGCTAAAACTGGAAGGATCTTTAGAAGTTATGCTGCATCTGATTTTGATAATGCCTTTGCACTGTGGACTGATGACAGGCAAAGTGTTCAAAATACTCTCACTACTAAAAATAAGGAGCTGGTAAAGACTGATCCTCTTATGCTAAATATGCCAGAGCCGCTACTCTTGTTATTCAGGACAGATTATTCTCTACAAGCTATTGGTCCTGGATCAGAAAAAGTTGCATGGAGTATGACAGTAGCTGAATTTGAGGCTGTATTATATTGCCAATGTAATGAAAATCCATCTGGTAGGGCTTCATTTGATTCAGGGAGTAAGTATGCTTGTGACAGTGGCCTGGATTTTGCTTTGCCATACCCATGTCAGGAGAAAAAAAAGGTCTACCGCCTGCCAAAAAATTTTCCGTTACAACCTTCAATTGTTGAGAGATTACCTGAGTCTGATCATGGAAATGAAATGCTCCCAATTCCTGATTCATATCTGATGCTCCCCTCACAACCTAATAGTGATAGATTTTTGGATGGCCATGATAATATTAAGATGCTTCCCATGCCTGTGCCAAATTCTTTGCCTCCTCTGCAGCCAGAAATGGGCTTCCATGTCAACAGTGATGACCCTGTTGAGCTTCCTCAACCTCCTACAGAGATTATACCAGGTGAAGTTGATCTGAATAGGGTGATAACATGGTCAACAACATTGCCTTTGATTCTGTTCATAGTCTTTCTCCTGGTCTCTTTGATTTACTTCTATCCTCTGGTAGCTAAAAAGGATCTTGAATTGAAAGGCCAAAACAGTGAGTTTGATTTAAGAAGTACTCCTAAGAAAAAGAAAATGCGTAAGTCAGGAAAGAACAATGGCACTGTAGACAAAAGGGATAAGCAGCTGTCATCAGAAGATGAGGATGTAATGGCACGTAGCAGCATTGATAGGGAATCTTGGCTACATACTAATAAAGTAGATGAATGTGCTGTTGGACGCAAGATTGGTAAACTATTTGTATTGAATAAAGAAATTGCGAAGGGAAGCAACGGTACCATTGTCTTAGAGGGAACATATGAATGCCGAGCAGTTGCTGTAAAACGTCTTGTCCAGGCTCATCATGATGAGGCTTTTAAAGAAATTCAAAATCTCATTGCATCTGACCATCACCCAAACATTGTCCGATGGTATGGGGTGGAATATGATCAAGATTTTGTTTACCTTGCTCTGGAGCGTTGTACATGTAACTTGGATGATTTGATTCAGATTCACTCAGATATATCAGAAAACCTAGTGTATAGCAAGAACCAAGCTTTGATAAAGGCCCAGTTGGAGACAGGAAAGCATAATATGCAAAATCTTTGGAAAGCAAATGGCTTCCCATCACCTCTACTGTTGAAGCTGATGAGGGATGTAGTTTCAGGGCTTTGTCATTTGCATGAACTGGGAATAGTTCACCGGGATTTGAAACCACAAAATATTTTGATAAACAAGGAAAGATCTTTATGTGCGAAGCTTTCTGATATGGGCATTAGTAAACGCCTTCTTGACGATATGTCTTCTTTTGGCCATAATGGTACCGGCTGTGGCAGTTCAGGTTGGCAAGCACCAGAACAGCTTGCTCAAGGACGCCAAACAAGAGCAGTAGATTTATTTAGTTTAGGCTGTGTCCTTTTCTTCTGTCTTACAGGGGGAAGACATCCATTCGGAGAACGTCTTGAACGTGATGTCAATATAGTGAAAAATCGTAAGGACCTATTTTTAGTGGATTTCATTCCTGAAGCTGAGGATGTTATCTCTGGTTTATTAAATCCTGATCCTGATCTAAGGCCCAAGGCAGTTGAAGTACTGCACCATCCTTTTTTATGGGATTCAGAGATGAGACTTTCTTTTCTCCGCGATGCTAGTGACAGAGTGGAATTGGAAGATAGGGAGACTGATTCTGATCTTTTGAAGGCATTGGAAAGCAGTGCACCTGTGGCTTTGGGTGGGAAATGGGATGAAAAGTTGGAACCAGTCTTCATTGCTAACATTGGTCGTTACCGGCGATATAGATTTGACAGCATTCGAGACTTGTTACGAGTCATGAGAAACAAGCTGAATCACTACAGAGAATTGCCTCAAGAAATTCAGGAACTTGTAGGACCTGTTCCAGAAGGATTCAATGACTACTTTGCAAGTCGATTTCCGAAACTCTTGATTGAAGTGTACAAAGTTATATACAAATATTGCAAGACGGAGGAATGTTTTCAACGGTATTTTAAAAATGTTGACTAG	2784	0.4045	MKFRFFCISCLIVILLIILFSSLTGDVSVSKSESSQVSLVGDHEEDFKGLALPSSRSLLSHPSKPRTALIAAPDQNGTIHLVESGSMRIVWSFPTGSPIYGSYHAPLKQDNDKENISGPISEFIEVGDDWGLYQRKPFGKMRLLTSIEDVVRATPKISNDGVVMLGAKRITVFEVDAKTGRIFRSYAASDFDNAFALWTDDRQSVQNTLTTKNKELVKTDPLMLNMPEPLLLLFRTDYSLQAIGPGSEKVAWSMTVAEFEAVLYCQCNENPSGRASFDSGSKYACDSGLDFALPYPCQEKKKVYRLPKNFPLQPSIVERLPESDHGNEMLPIPDSYLMLPSQPNSDRFLDGHDNIKMLPMPVPNSLPPLQPEMGFHVNSDDPVELPQPPTEIIPGEVDLNRVITWSTTLPLILFIVFLLVSLIYFYPLVAKKDLELKGQNSEFDLRSTPKKKKMRKSGKNNGTVDKRDKQLSSEDEDVMARSSIDRESWLHTNKVDECAVGRKIGKLFVLNKEIAKGSNGTIVLEGTYECRAVAVKRLVQAHHDEAFKEIQNLIASDHHPNIVRWYGVEYDQDFVYLALERCTCNLDDLIQIHSDISENLVYSKNQALIKAQLETGKHNMQNLWKANGFPSPLLLKLMRDVVSGLCHLHELGIVHRDLKPQNILINKERSLCAKLSDMGISKRLLDDMSSFGHNGTGCGSSGWQAPEQLAQGRQTRAVDLFSLGCVLFFCLTGGRHPFGERLERDVNIVKNRKDLFLVDFIPEAEDVISGLLNPDPDLRPKAVEVLHHPFLWDSEMRLSFLRDASDRVELEDRETDSDLLKALESSAPVALGGKWDEKLEPVFIANIGRYRRYRFDSIRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFNDYFASRFPKLLIEVYKVIYKYCKTEECFQRYFKNVD	927

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g1196	927	ProSiteProfiles	Protein kinase domain profile.	508	791	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g1196	927	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1	795	927	-	-
	Dere09g1196	927	SMART	PGNneu	856	910	-	-
	Dere09g1196	927	Gene3D	KEN domain	794	927	IPR038357	-
	Dere09g1196	927	Gene3D	Transferase(Phosphotransferase) domain 1	613	793	-	-
	Dere09g1196	927	Gene3D	Phosphorylase Kinase; domain 1	493	580	-	-
	Dere09g1196	927	PANTHER	IRE1-RELATED	142	925	IPR045133	GO:0004521\|GO:0004674\|GO:0030968
	Dere09g1196	927	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1a	616	793	-	-
	Dere09g1196	927	CDD	RNase_Ire1	795	923	-	-
	Dere09g1196	927	FunFam	Putative Serine/threonine-protein kinase/endoribonuclease IRE1	501	580	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g1196	Dere-ChrDere09	15731021	15736594	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g1196	534	791	MAP Kinase Kinase Kinase	AT3G06030	27.481	1.54e-21	98.6

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	IRE1	Dere09g1196		Pkinase	4e-40	CL0016

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere09g1196	09	15731021	15736594	Dere09g1196	09	15731021	15736594	ECH

Showing 1 to 1 of 1 entries