Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1194 ATGCCACTGCTTCTTGTGGAAAACATCATTAGCAAAGTTTGGCTTCTTGTACTTCTGATCTTCTACAATGGCTTCCCTTCAGACGGAAACAATATCTTCTCTTCTACCAGACCCAGTGTCGTTAACATTGGGGCAGTTTTATCTTTCAATTCAACTATTGGCAAAGTGGCAAAAGTTGCAATTGAAGCAGCTGTCCATGATATCAACTCCAATCCAAAGCTTCTCAGCGGAACTAAGCTTAATATTTCCATGAAGGACACAAACATCTCCAGTGGATTTCAGGGAATCATTGATTCTTTCCTGTTGATGGAGCAAGATACTTTGGCCATTATTGGTCCTCAGTACTCAGTCATGGCTCATGTGATTTGTCATATAGCAAATGAGCTGCAAGTGCCTTTACTTTCATTTGCAGCCACAGACCCCTCTCTGTCTTCACTTCAGTTCCCATATTTTGTGAGGACAACGCACAGTGATCTGTTTCAGATGGCTGCTGTGGCAGAAATTGTGAACTACTATCAATGGAGAGATGTCATAGCAATTTTCATCGATGATGATCATGGAAGAAATGGGGTAGCTGCTTTAGGGGATGCCCTATCAGAGAAACGGCGTAAAATCTCATACAGGGCACCCCTTAAACCTGATAATTTAACCCAACAAGAAATAAAAAGTGCCTTACATAAGGTAGGTTTAATGGAGTCCAGGGTTATAGTCCTCCACATATACTCCAATTTTGGTCTAGATGTACTTCATGTGGCCAAGTCTCTTGGAATGATGGGAAATGGGTATGTGTGGATAGCTACTGATTGGCTTTCAACTATCCTAGATACATACCGATCCATGTCCTCCTCTTCATCCATGAATGATATCCAAGGAGTTCTTTCCTTGCGCATGTACACCCCAGATTCAGGAGCCAAAAGGGAATTTGTTTCAAGGTGGATTAACCTAACAAGCGAAAAAGCTACCAATCAAACTCCTTTTGGGTTGAACGTTTATGGTCTATATGCCTATGACACAGTTTGGGTTCTTGCATATGCACTTGATGCATATTTTAACAGCGGAGGAACGTTGTCATTTCCAACTAATTCAAGTATAAACTTGTTAAAAGGGAATAATAACCTGCATCTTGACACCATAGGGGTCTTTTCTAATGGTAGTGGATTGCTTCAAAACATTTTACAGGTCAATAGAACTGGTTTAATAGGCCAATTGATGTTTGGTCCAGATGGGAACTTCATGCATCCTGCATATGAAATCATCAATGTGGTTAACACTGGACTAAAAAGGATTGGTTTTTGGTCAAATTCCCTTGGTCTCCACACTAGGCAAGAACCAAACCATTTCAACTCCAATGGAGGACTAGATAATGTCACATGGCCCGGTCAAGCAAATCACCAAACACCTCGTGGGTGGGTTTTTGCCAGCAATAGAAGGCCTCTGAGAATTGGGGTGCCAGTCAGAATCAGCTACCATGAATTTGTCTCAAGAATTGAAGGCTTTGAGAAGTTTGGTGGATACTGCATAGACGTGTTCACAGCTGCACTGAAGCTTTTGCCTTATAAAGTTCCATACACGTTTATCCCATTTGGAGATGGCAGAACCAACCCATTGAACTCACAGCTTCTGGAAAAGATCACAACTGGTGAGTTTGATGCTGTGCTTTTCAACCCTGTTTTTCTCGCATAATGTGACTATGGTATTGTTGGCCAAGAGTTCACCAAAATGGGATGGGGCTTTGCTTTCCCAAGGGACTCTCCCCTAGCAATAGAGATATCAACAGCCATCCTAACTCTATCAGAGACTGGTGATCTGCAAAAAACTCAAGACAAATGGCTCACAACATCAGCTTGCAGCTCAGAAAGTGCAAAGCAAAATGTACACAGACTTGAGCTCAAAAGCTTTTGGGGCCTTTTCCTTCTAAGTGGCATTGCATGCTTCATTTCTCTGCTTTCCTATCTTGTCAGAATGGCTTACCGTTTCAGCGCAAATGCCAATAGTCTCGTCCTCGAGGGCTCCTCACTCTCTGCTCGCCTTAGCTCGTTCTTCTCCTTTGTGAATGAGAAAGAGGAAGAAGAAGAAGACAGAGAGAGGCCAAAGAGAAAGAGAAAGGAAAGTAGAAGTTGTCGAAGAGTAGTGCATGATGAAAATGGCTCAATTGTTAGTGTCCACGTTCAAAATCATGCCCAAGGCGAACCAGTTCATGCCATGAGGGCCCTTGCGTAA 2220 0.4261 MPLLLVENIISKVWLLVLLIFYNGFPSDGNNIFSSTRPSVVNIGAVLSFNSTIGKVAKVAIEAAVHDINSNPKLLSGTKLNISMKDTNISSGFQGIIDSFLLMEQDTLAIIGPQYSVMAHVICHIANELQVPLLSFAATDPSLSSLQFPYFVRTTHSDLFQMAAVAEIVNYYQWRDVIAIFIDDDHGRNGVAALGDALSEKRRKISYRAPLKPDNLTQQEIKSALHKVGLMESRVIVLHIYSNFGLDVLHVAKSLGMMGNGYVWIATDWLSTILDTYRSMSSSSSMNDIQGVLSLRMYTPDSGAKREFVSRWINLTSEKATNQTPFGLNVYGLYAYDTVWVLAYALDAYFNSGGTLSFPTNSSINLLKGNNNLHLDTIGVFSNGSGLLQNILQVNRTGLIGQLMFGPDGNFMHPAYEIINVVNTGLKRIGFWSNSLGLHTRQEPNHFNSNGGLDNVTWPGQANHQTPRGWVFASNRRPLRIGVPVRISYHEFVSRIEGFEKFGGYCIDVFTAALKLLPYKVPYTFIPFGDGRTNPLNSQLLEKITTGEFDAVLFNPVFLAXCDYGIVGQEFTKMGWGFAFPRDSPLAIEISTAILTLSETGDLQKTQDKWLTTSACSSESAKQNVHRLELKSFWGLFLLSGIACFISLLSYLVRMAYRFSANANSLVLEGSSLSARLSSFFSFVNEKEEEEEDRERPKRKRKESRSCRRVVHDENGSIVSVHVQNHAQGEPVHAMRALA 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1194 739 CDD PBP1_GABAb_receptor_plant 42 438 IPR044440 -
Dere09g1194 739 Gene3D - 473 617 - -
Dere09g1194 739 SMART GluR_14 480 613 IPR001320 GO:0015276|GO:0016020
Dere09g1194 739 FunFam Glutamate receptor 157 318 - -
Dere09g1194 739 Gene3D - 157 438 - -
Dere09g1194 739 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 557 690 IPR015683 -
Dere09g1194 739 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Dere09g1194 739 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Dere09g1194 739 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Dere09g1194 739 Pfam Receptor family ligand binding region 59 422 IPR001828 -
Dere09g1194 739 Gene3D - 59 413 - -
Dere09g1194 739 FunFam Glutamate receptor 577 610 - -
Dere09g1194 739 SUPERFAMILY Periplasmic binding protein-like II 465 613 - -
Dere09g1194 739 SUPERFAMILY Periplasmic binding protein-like I 36 470 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1194 Dere-ChrDere09 15714683 15718975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1194 562 698 Ion Channels AT1G42540 49.315 5.63e-37 147