Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1190 ATGTCGTGCTCGTCGTCGTCGGGGTCTGAGGAAGATGATGAGGGCTTCGAATCATACAGGAAAGGAGGCTACCATGCCGTCAGGGTCGGCGATCAGTTCGCCAGTGGCAGATACATAGCACAGAGGAAGCTCGGTTGGGGTCAGTTCTCAACTGTGTGGCTTGCTTACGACACTCGCACCTCTACATATGTTGCTCTTAAGATCCAGAAGAGTGCAGCCCAGTTTGCTCAGGCTGCCCTTCATGAGATGAATGTTCTTTCCTCTATTGCTGATGGTGACCCTTTAAATTCAAAGTGTGTTGTCCACTTGATTGACCACTTCAAACACACAGGTCCAAATGGCCAGCACCTTTGTATGGTCCTTGAGTTTCTTGGTGATAGTTTGCTTCGTCTGATCAAATATAACCGTCACAAAGGCCTTCCATTAAATAAAGTCAGGGAGATTTGTAAATGCATTTTAATTGGTCTGGATTACTTGCATAGAGAACTTGGTATAATCCACACTGATCTAAAACCTGAAAATATTCTTCTCTTTTCTTCAATTGATGCTGCTAAGGACCCTGTTAGATCTGGACTCTCTCCAATCCTGGAGAGGCCGGAGGGAAACCCAACTAGTGGAGTTACTAGTCTTATTGAGAGAAGGTTAAAAAGAAGGGCAAGGAGGGCAGTTGCTAAGATATCTGAAAAACGTGAATCAATGGGAGGAGCAGGAGAAGCTCGGAAGTCTGAAAGAAATGTTGAAGGGATTGATATGAGATGCAAGATAGTAGATTTTGGAAATGCCTGTTGGGCTGACAAGCAAATTGCAGAAGAAATCCAGACAAGGGAGTACAGAGCTCCTGAAGTAATATTACGGGCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCACGGCTTTTGAGCTTGCTACTGGTGATACGATGTTTACCCCTAACGTTGGCCAAGGCTTTAGTGAGGATGAGGATCACCTTGCCATGATGATGGAACTTCTTGGAAAAATACCGCGGAAGGTTGCCATCTCTGGAGCACGATCCAAAGATTACTTTGACAGACATGGGGATCTAAAACGGATTCGGAGGCTAAAATTCTGGCCACTCGACAAATTGTTGATTGATCGTTACAAGTTTCCAGAGAATGACGCAAGGGAGTTCTCGGACTTTCTTCTACCTCTTCTTGATTTTACACCAGAGAACCGGCCAACTGCGCAGCAGTGCTTGCAACACCGATGGCTCAATGGCAAGGATTCAACTCCAAATAAGAATAGAACCGAATCTAATGTGGAAAAAGTTAATGTTGGGATGAGCAACCTCAAAATCAATGTGGGAAAGTGA 1338 0.4484 MSCSSSSGSEEDDEGFESYRKGGYHAVRVGDQFASGRYIAQRKLGWGQFSTVWLAYDTRTSTYVALKIQKSAAQFAQAALHEMNVLSSIADGDPLNSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRHKGLPLNKVREICKCILIGLDYLHRELGIIHTDLKPENILLFSSIDAAKDPVRSGLSPILERPEGNPTSGVTSLIERRLKRRARRAVAKISEKRESMGGAGEARKSERNVEGIDMRCKIVDFGNACWADKQIAEEIQTREYRAPEVILRAGYSFSVDMWSFACTAFELATGDTMFTPNVGQGFSEDEDHLAMMMELLGKIPRKVAISGARSKDYFDRHGDLKRIRRLKFWPLDKLLIDRYKFPENDAREFSDFLLPLLDFTPENRPTAQQCLQHRWLNGKDSTPNKNRTESNVEKVNVGMSNLKINVGK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1190 445 SUPERFAMILY Protein kinase-like (PK-like) 32 419 IPR011009 -
Dere09g1190 445 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Dere09g1190 445 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Dere09g1190 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1190 445 FunFam Protein kinase superfamily protein 24 123 - -
Dere09g1190 445 CDD STKc_SRPK 27 413 - -
Dere09g1190 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Dere09g1190 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Dere09g1190 445 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 214 - -
Dere09g1190 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1190 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Dere09g1190 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1190 445 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1190 Dere-ChrDere09 15675507 15679460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1190 4 414 EF-hand Containing Proteins AT5G22840 49.892 1.43e-165 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Dere09g1190 Pkinase 9.1e-22 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1190 09 15675507 15679460 Dere13g0818 13 10092914 10096418 CCT
Dere09g1190 09 15675507 15679460 Dere09g1190 09 15675507 15679460 ECH