Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1182 ATGATTAGCATGATTCTGGATTCGTTTATACCAAACACGGTCTTAGAATTATTGCAGCGGTGGAAAGAGGGTGGAAAGGTACAGTCTTCAACTGATCGAGCCACCTGGATGTCAACTGAAAAGGAACCACGAAAGAAAATCGTAGCATTGCGCAAGCTTTTCACTCTGCACTCTTTTATCTCCTCTCTTTTGAAAACCCTACGTTCAAAGGTAACTTGGATCAACATGCCTAAAACGAAAGCTGATGCCAGAGCGGCCGATAACCGTTTGAAGCGCAAGGGCGCTGGAGCCGGAAGGAAACAGTCGAAGAAAGCTACTAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTTATGGCCGAGTTCAGAGAGCAGTATAAAAAGGACCATCCAAACAACAAATCTGTCGCTGTTGTCGGTAAAGCTGGCGGTGAAAAGTGGAAATCGATGTCTGATGCTGAAAAAGCTCCCTACATAGCTAAGGCGGAGAAGAAGAAAGAAGAATACGACAGAACTATTCAATCTTACAATAAGAGATTGGCTGAGGGTAAAAATCCTTCAGAGGAAGAAGAGTCAGACAAGTCAAGGTCTGAAGTGAACGATGATGATGAGGAGGAGGAAGAAGATGATGAGTAA 648 0.4414 MISMILDSFIPNTVLELLQRWKEGGKVQSSTDRATWMSTEKEPRKKIVALRKLFTLHSFISSLLKTLRSKVTWINMPKTKADARAADNRLKRKGAGAGRKQSKKATKDPNKPKRPPSAFFVFMAEFREQYKKDHPNNKSVAVVGKAGGEKWKSMSDAEKAPYIAKAEKKKEEYDRTIQSYNKRLAEGKNPSEEEESDKSRSEVNDDDEEEEEDDE 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1182 215 CDD HMG-box_AtHMGB1-like 113 173 - -
Dere09g1182 215 Pfam HMG (high mobility group) box 112 181 IPR009071 -
Dere09g1182 215 MobiDBLite consensus disorder prediction 82 116 - -
Dere09g1182 215 MobiDBLite consensus disorder prediction 146 215 - -
Dere09g1182 215 SUPERFAMILY HMG-box 100 183 IPR036910 -
Dere09g1182 215 Gene3D High mobility group box domain 96 202 IPR036910 -
Dere09g1182 215 SMART hmgende2 111 182 IPR009071 -
Dere09g1182 215 Coils Coil 163 183 - -
Dere09g1182 215 MobiDBLite consensus disorder prediction 199 215 - -
Dere09g1182 215 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 112 181 IPR009071 -
Dere09g1182 215 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 78 212 IPR031061 -
Dere09g1182 215 MobiDBLite consensus disorder prediction 151 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1182 Dere-ChrDere09 15591207 15593741 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere09g1182 HMG_box 6.5e-22 CL0114