Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1179 ATGGATTCAGCACGGACTAGTTTGCTGACCACTCTTGTTGTCTTCCAGAACACCGTTAAAGAAGAGTTGTTCAGGAGCGTGCATGTCTACCGATTGAGGGATGGGGGGAAAAGCGAAGTTGAAAGAGAGTTTGTGTTTTCTCGGAGTGGCTCATACGGGGAAATGCGGGCTACCCCAATTCTTAGATTACAGAAATTTCGTGTTTCGGAAGTTTTTGAAGGGTATCAGAATGGAGTGTGGGTTTGTGTCTTTGCGTTTCACGCCGATCACAAGCCCAAATTTTCCCGCATTCCTTCATTTTTATCAGTCTCGAGTAATCCCAAGCTTCAGATGATCCCAACATTACTTAATGATCTCCTTATGATTCAAGAGTTGGATTGCAAATCACAAGAAAGCACTATCCCACAAATCTCTACAGATGAAAGATGCCGAGGAGATGGCAATGATTGCCATCAGCCAAGAAAAGTTTTGCTCCAGGATCTGAATTGTCTTCCTTGTCCTGATGACATGCCTAAATTACAAGACAACGAGCCAGATGGTGAAAGTTTAGACATGTCTAAATTACCAGAGAACGAGCCAGATGATGAAAGTTTAGACCCAGCTGACTTACCAGAAAATGACCTTGTTAATGAAGATTTACCAGGTAACACAGAGAAGAAAAAGAGGGCAGCTAGTAAAGATGTAGCAAGCCTTGGGTTAGCAGATCTGGTGAAGTACTTTGACGTGCCTATTGCAGAAGCATCAAGAAATCTGAAAGTTGGACTTACTGTACTCAAGAGGAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATTAAATCACTTGACAATCTCATTCATGATCTTCAGGAAGTGGCGGAAAATGAAGAAATAGAGAACAATGCTGCAGTCATGGCTGTGACAAAGAGGCAAAGGATGCTTGAGAGTGAAAAAGAAATTATTGAGAGGAGACCCTCCACGGACATACAAAGAGAAACGAAGAGATTCAGGCAGGATGTCTTCAAGAGAAGGCATAGAGCTAGAGCTATGATAAAACAGAGCTCTAGTGCCTCCAGCTCTTAG 1071 0.4304 MDSARTSLLTTLVVFQNTVKEELFRSVHVYRLRDGGKSEVEREFVFSRSGSYGEMRATPILRLQKFRVSEVFEGYQNGVWVCVFAFHADHKPKFSRIPSFLSVSSNPKLQMIPTLLNDLLMIQELDCKSQESTIPQISTDERCRGDGNDCHQPRKVLLQDLNCLPCPDDMPKLQDNEPDGESLDMSKLPENEPDDESLDPADLPENDLVNEDLPGNTEKKKRAASKDVASLGLADLVKYFDVPIAEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLQEVAENEEIENNAAVMAVTKRQRMLESEKEIIERRPSTDIQRETKRFRQDVFKRRHRARAMIKQSSSASSS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1179 356 Coils Coil 275 295 - -
Dere09g1179 356 ProSiteProfiles RWP-RK domain profile. 213 298 IPR003035 -
Dere09g1179 356 PANTHER PROTEIN RKD4 150 353 IPR044607 GO:0003700
Dere09g1179 356 Pfam RWP-RK domain 231 278 IPR003035 -
Dere09g1179 356 MobiDBLite consensus disorder prediction 172 194 - -
Dere09g1179 356 MobiDBLite consensus disorder prediction 169 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1179 Dere-ChrDere09 15564754 15568845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1179 19 356 AtRKD Transcription Factor Family AT4G35590 46.377 1.08e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dere09g1179 RWP-RK 2.3e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1179 09 15564754 15568845 Dere09g1179 09 15564754 15568845 ECH