Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1178 ATGGGTCTATGCTTTGGGTCTCTCGCTCACGTTGATGGACCAGAGTCTAGTGTCAATAGACATCCATATTCAGGTTCAGCAAGTACAGACAGCAAGGACGCTGGGTTCTCTACTACGAGCAGCAGTGCTGCAAAGAGTCACTTTTCAGAAATAGCAAGTGGGAGCGTCGGGGAGTCCCTTCCTTCTCCGAATGGGCAAATTCTTGAAACCCCAAACTTGAAGGTCTTTAGTTTTGGAGACTTGAAAGCAGCCACAAAGAACTTCAGACCCGATACATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGGATGAAAGGACACTGGCACCAGCTAAGGCAGGGTCTGGAATCGTGGTTGCTATTAAAAAATTGAACCCGGAAAGCGTGCAAGGATTCCAAGAGTGGCAGTCAGAAGTCAATTTTTTAGGAAGGCTTTCTCACCCCAACTTGGTCAAGCTATTGGGTTACTGTTGGGACGCTGAGGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATTGAACCACTTTCTTGGGACACGCGACTCAAAATAGCTATTGGTGCAGCTTCGGGCCTGGCTTTTTTGCACACTTCAGAAAAGCAAGTGATATACAGAGATTTCAAGGCCTCAAATATACTACTTGATGTGAATTATAATGCAAAAATTGCTGATTTTGGCTTGGCAAAATTGGGGCCTGCTGGCGGAGAATCACATGTGACCACTAGGGTCATGGGTACTTATGGCTATGCTGCTCCAGAATACGTTGCAACAGGTCACTTGTATGTAAAGAGTGACGTGTATGGCTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGTTTGAGGGCACTTGATTCAAGGCGACCTAGTGGGCAGCAGAATCTGGTTGAATGGGTTAAGCCATATCTCTCTAACAAGAGAAGGCTGAAAACCATTATAGATGCTAGGATTCAGGGCCAATATTCACTCAAGGCAGCATCACAAGCTGCTCAACTTACTCTAAAATGCCTACAGCATGATCCTAAACACCGACCTTCCATGAAAGAAGTACTTGTGGCATTGGAAGGCATTGAAGGCATCAAAGACAAAGTAAAGGTATCTAAGAACCGCCGTGCTCGACCTGCAGCTCATGACCCTCCCCACTAG 1194 0.4573 MGLCFGSLAHVDGPESSVNRHPYSGSASTDSKDAGFSTTSSSAAKSHFSEIASGSVGESLPSPNGQILETPNLKVFSFGDLKAATKNFRPDTLLGEGGFGKVYKGWLDERTLAPAKAGSGIVVAIKKLNPESVQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDAEELLLVYEFMPKGSLENHLFRRNPNIEPLSWDTRLKIAIGAASGLAFLHTSEKQVIYRDFKASNILLDVNYNAKIADFGLAKLGPAGGESHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLRALDSRRPSGQQNLVEWVKPYLSNKRRLKTIIDARIQGQYSLKAASQAAQLTLKCLQHDPKHRPSMKEVLVALEGIEGIKDKVKVSKNRRARPAAHDPPH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1178 397 MobiDBLite consensus disorder prediction 19 39 - -
Dere09g1178 397 CDD STKc_IRAK 94 373 - -
Dere09g1178 397 Gene3D Phosphorylase Kinase; domain 1 61 173 - -
Dere09g1178 397 PANTHER OS01G0588500 PROTEIN-RELATED 42 373 - -
Dere09g1178 397 MobiDBLite consensus disorder prediction 15 39 - -
Dere09g1178 397 FunFam Serine/threonine-protein kinase PBS1 174 388 - -
Dere09g1178 397 Pfam Protein tyrosine and serine/threonine kinase 92 368 IPR001245 GO:0004672|GO:0006468
Dere09g1178 397 SUPERFAMILY Protein kinase-like (PK-like) 63 371 IPR011009 -
Dere09g1178 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Dere09g1178 397 Gene3D Transferase(Phosphotransferase) domain 1 174 391 - -
Dere09g1178 397 ProSitePatterns Protein kinases ATP-binding region signature. 94 127 IPR017441 GO:0005524
Dere09g1178 397 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1178 397 FunFam Serine/threonine-protein kinase BIK1 56 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1178 Dere-ChrDere09 15559015 15562494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1178 74 397 Glycoside Hydrolase AT3G07070 48.923 2.76e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere09g1178 PK_Tyr_Ser-Thr 9e-48 CL0016