Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1167 ATGGGAGGTGACAGTGCCGTTGATGATGCGACCGCCACCCAGTCCAAGGGCAGTGATGGAGTGAATATCAACATTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATTAGCCTCGAATCCACTGTCGGATTGTTCAAGGAGCTTGTCGCTCGGAATTGCGATATCCCGGCTGATCAACAGCGGCTGATTTATAAGGGTCGGATTTTAAAGGACGATCAAATCCTGCAAAGCTACGGTTTGGAGGCAGATCACACGGTCCATTTGGTTCGTGGCTTTGCTCCAGCTGCAGCAGCCAATACTACTGGTGGGACCAATACCAGTGGTACAAATACCACAACAAATAATGCAAGAGCTGCTACTAATGAAGGTGGGGGTCTAGGAGGGCCTGGTTTTGGAGATTCACTGTTGCCTGGACTAGGTATCAATGGGCTTGGGGGAAGTGGCATCAATGGCTTGTTTGGAGCAGGCCTTCCGGATCTTGAACAAATGCAGCAGCCATTTATTAATAATCCCAATATGGTTAGAGAAATGATGAACACCCCTGCTATACAGAATCTAATTAATAATCCTGAGATAATGCGGAGTCTTATAATGAGCAATCCACAATTGCGAGAGCTCATGGATCGAAATCCTGAGCTAGCACACATACTTAATGACCCTGCCACTCTCCGTCAGACACTTGAAGCTACAAGAAACCCTGAGATTATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAAGGATTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCCACAACAATGGCTGGTAATACAGGAAATGACAACTCTAACCCATTTGCTGCACTTTTGGGAACTCAAGGTGGACAAGCTAGGGATCGATCAACTAATCCTTCAACTACTAGTGCTGAAACAACTGCTGGTTCACCCTCCCCTAATACTAACCCACTTCCTAATCCTTGGAGCTCTACTGGAACTGGAGGTGCCCAAAATAACACTGCAAGGACAACTACTGGTGGGGATGCTAGGCAGCAGGCACCCACTGGGTTAGGAGGACTCGGTCTGCCGGATTATCAAGGCATGTTGGGTGCTATGCCTGATCCTGCCTTATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAACCAGGTTCTTGGCATCAATCCTGACCAGCGTGGCGTACCAGACTTAAATTCTCATCTTAGAGAAGTGATGCAAAACCCTGAGTTTCTTCGCTTGTTTTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAACAAGCTCTTCTTTCTCAGCTTGGTCGGTCACCATCAACACAGGAATCAGGTCAGACTGGCGGAGGCACTGGAGCAATGAACAATGCGGGGTTGGAGATGTTGATGAATATGTTTGGTGGACTTGGGGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCGCCGGAACAATTGTATGCCACCCAGCTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACGCAAGAGAACATCCGAGCTCTTGTTGCCACTCAAGGGAATGTTCATGCAGCAGTTGAACGGCTTCTGGGGAACTCTGGCCAGTAG 1659 0.472 MGGDSAVDDATATQSKGSDGVNINIRCSNGSKFSVQISLESTVGLFKELVARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAANTTGGTNTSGTNTTTNNARAATNEGGGLGGPGFGDSLLPGLGINGLGGSGINGLFGAGLPDLEQMQQPFINNPNMVREMMNTPAIQNLINNPEIMRSLIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFAALLGTQGGQARDRSTNPSTTSAETTAGSPSPNTNPLPNPWSSTGTGGAQNNTARTTTGGDARQQAPTGLGGLGLPDYQGMLGAMPDPALLTQLMQNPAISQMMQSILSNPQAMNQVLGINPDQRGVPDLNSHLREVMQNPEFLRLFSSPETMQQLLSFQQALLSQLGRSPSTQESGQTGGGTGAMNNAGLEMLMNMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALVATQGNVHAAVERLLGNSGQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1167 552 CDD UBA_PLICs 510 548 - -
Dere09g1167 552 MobiDBLite consensus disorder prediction 98 127 - -
Dere09g1167 552 SMART CBM 151 188 IPR006636 -
Dere09g1167 552 SMART CBM 365 407 IPR006636 -
Dere09g1167 552 SMART CBM 411 446 IPR006636 -
Dere09g1167 552 SMART CBM 201 240 IPR006636 -
Dere09g1167 552 FunFam Ubiquitin domain-containing protein DSK2b 18 105 - -
Dere09g1167 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
Dere09g1167 552 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Dere09g1167 552 Gene3D - 492 552 - -
Dere09g1167 552 MobiDBLite consensus disorder prediction 276 363 - -
Dere09g1167 552 MobiDBLite consensus disorder prediction 99 121 - -
Dere09g1167 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Dere09g1167 552 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Dere09g1167 552 MobiDBLite consensus disorder prediction 457 478 - -
Dere09g1167 552 SMART uba_6 510 548 IPR015940 -
Dere09g1167 552 PANTHER UBIQUILIN 16 547 IPR015496 -
Dere09g1167 552 MobiDBLite consensus disorder prediction 276 354 - -
Dere09g1167 552 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Dere09g1167 552 Gene3D - 8 104 - -
Dere09g1167 552 SMART ubq_7 21 92 IPR000626 GO:0005515
Dere09g1167 552 SUPERFAMILY Ubiquitin-like 11 109 IPR029071 -
Dere09g1167 552 CDD Ubl_Dsk2p_like 21 93 - -
Dere09g1167 552 MobiDBLite consensus disorder prediction 457 475 - -
Dere09g1167 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 549 IPR015940 -
Dere09g1167 552 Gene3D - 196 254 - -
Dere09g1167 552 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1167 Dere-ChrDere09 15381450 15387018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1167 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.04e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1167 09 15381450 15387018 Dere13g0807 13 10004000 10009032 CCT
Dere09g1167 09 15381450 15387018 Dere09g1167 09 15381450 15387018 ECH