Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1166 ATGGTCACTCATAAGGAATCCAACCCCAGAGACGCGAAAAACAAGAAGTTTCGTATGATTTATCAACCAAATTTCAAAATGGTCATTTCTGATCATAACAGTCAGAACAATCCTAACCTAATCAAACCCACGAATTTCCAAGAAATGGGGACCAGAAAGTTTGGGAACAACAGAAGAGCGTTGAGTGTGATTAACCAGAGTCTAGTGGAGGGTCGAGCGTATCCATGCGTCGTTAACAAGAGGGGATTGTCAGATAAACATGAAATTTGTGAAAAGAAGCAGGTGGATCCAGTGCATCGACCGATCACCAGGAGGTTTGCTGCTCAGATTTCTGGCACACAGCAATCTCTCACCGAGGAAAATAAGAAGCAAAGTACATCAATTTCAAAGTGGAATGAATTTGGAGACGCTATATTCATTGATGATGAACACAAGTCACCTTCAGATCAGCCAGTGCCCATGTCATTAGAACAAACAGAATCAATGCATAGTGAAGTGGATCAGACGGGGGAAGTTGAGATGGAGGATATAGTTGAAGAGCCCATTGTGGACATTGATTCTGGTGATGCCACTAATCCTCTTGCAGTGGTAGACTATATTGATGAACTTCAGGACTACTACAGAAAAATGGAGAGCATTAGCTGTGCCTCACCAAATTATATGGCACAGCAAGATGACATTAATGAAAGGATGAGGGCTATACTGATTGACTGGCTTATTGAGGTGCATGATAAATTTGACCTAATGCACGAGACTTTGTTCCTTACAGTTAATATCATAGATAGATTTTTGGCAAAGCAAAACATGGTAAGAAAGAAACTTCAGCTGGTTGGCCTGGTTGCCATGCTTTTGGCATGCAAGTATGAGGAAGTTTCTGTACCTGTAGTAGGGGATCTGATCCTTATATCAGACAAAGCATACACAAGGAAGGAAATTCTGGAAATGGAGAAGTTGATTCTCAACAAATTGCAGTTTAACATGTCAGTGCCAACAGCATATGTTTTTATGAGAAGGTTCCTAAAGGCAGCTGAAGTAAACAAGAAACTTGAGCTAGTAGCTTTCTTCTTGATAGAGCTATCTCTTGTGGAATATGAGATGCTGAAGTTCCCACCATCGTTGCTAGCTGCAGCTGCAGTCTATGCAGCTCACTGTACTACTTACGGCTTCAAACAGTGGAGTAAGACATGTGAGAGGTATACTAACTACTCAGAAGATCAGCTCTTAGTTTGCTCAAGGATGATGGTTGAGTTCCATCAGAAGGCAGGGACAGGGAAGCTCACAGGGGTATATAGGAAGTACTGCTCATCTAAGTTTAGCTATATTGCAAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACCAATTGTAG 1368 0.4152 MVTHKESNPRDAKNKKFRMIYQPNFKMVISDHNSQNNPNLIKPTNFQEMGTRKFGNNRRALSVINQSLVEGRAYPCVVNKRGLSDKHEICEKKQVDPVHRPITRRFAAQISGTQQSLTEENKKQSTSISKWNEFGDAIFIDDEHKSPSDQPVPMSLEQTESMHSEVDQTGEVEMEDIVEEPIVDIDSGDATNPLAVVDYIDELQDYYRKMESISCASPNYMAQQDDINERMRAILIDWLIEVHDKFDLMHETLFLTVNIIDRFLAKQNMVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEILEMEKLILNKLQFNMSVPTAYVFMRRFLKAAEVNKKLELVAFFLIELSLVEYEMLKFPPSLLAAAAVYAAHCTTYGFKQWSKTCERYTNYSEDQLLVCSRMMVEFHQKAGTGKLTGVYRKYCSSKFSYIAKCEPASFLLENQL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1166 455 ProSitePatterns Cyclins signature. 232 263 IPR006671 -
Dere09g1166 455 Gene3D - 204 443 - -
Dere09g1166 455 PIRSF Cyclin_A_B_D_E 18 455 IPR046965 GO:0016538|GO:0044772
Dere09g1166 455 SMART Cyclin_C_2 330 447 IPR004367 -
Dere09g1166 455 SUPERFAMILY Cyclin-like 329 447 IPR036915 -
Dere09g1166 455 SMART cyclin_7 334 416 IPR013763 -
Dere09g1166 455 SMART cyclin_7 237 321 IPR013763 -
Dere09g1166 455 SUPERFAMILY Cyclin-like 191 327 IPR036915 -
Dere09g1166 455 Pfam Cyclin, C-terminal domain 330 446 IPR004367 -
Dere09g1166 455 CDD CYCLIN_AtCycB-like_rpt1 179 325 - -
Dere09g1166 455 PANTHER CYCLINS 149 425 IPR039361 -
Dere09g1166 455 Pfam Cyclin, N-terminal domain 205 328 IPR006671 -
Dere09g1166 455 FunFam G2/mitotic-specific cyclin-1 318 442 - -
Dere09g1166 455 Gene3D - 216 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1166 Dere-ChrDere09 15368580 15374206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1166 27 451 Core Cell Cycle Gene Families AT1G20610 55.862 1.02e-170 484