Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1156 ATGTCGCACTTTGGAAGATCTGGTCTTCTTGACATTAGAGACACCTATTCCCTTCTAGTCCTCAATATCACTTTCCGTACAACCGTTGATGATCTTTACCCCCTTTTTGACAAGTACGGCAAGGTCGTTGATGTCTTCATCCCTAAAGGCCGAAGGATTGGCAAATCACGAGGTTTCGCGTTTGTTCGTTATAAGTATGCCAACGAGGCACAAAAGGCAGTGGATAAGCTTTATGGAAGATTCATTGATGGAAGAGAAATTATGGTTCAATTCGCAAAACACGGACCTAATGCTGAGAAAATTCACAAGGGCAGGATAGTGGAAGCATCCTCAAAGCCAAGAGGGCGGTCTAGAAGTCGCAGCCCTTATCCTAGGCACAAGGATGAATATAGAGGCAGAGACTACAGGAGAAGAAGTCATAGTAGAAGTAAGGAAAGATATGACCGTGACAAATACTGTGAAAAGGACAGGGATTATCGTGGCCAAAGTAGGAGCTGCAGTGCAAGTCCTGACTGGCATAAGGACTGTATGAGAGGAAGAGATGACAAAGAGCGACGAACCAGAAGCCAATTATATGATAGTGCATCGACTCCAGCTCGGCATGGCCCCAGTCCTCATAGAAGTCCATCACCATAA 636 0.4528 MSHFGRSGLLDIRDTYSLLVLNITFRTTVDDLYPLFDKYGKVVDVFIPKGRRIGKSRGFAFVRYKYANEAQKAVDKLYGRFIDGREIMVQFAKHGPNAEKIHKGRIVEASSKPRGRSRSRSPYPRHKDEYRGRDYRRRSHSRSKERYDRDKYCEKDRDYRGQSRSCSASPDWHKDCMRGRDDKERRTRSQLYDSASTPARHGPSPHRSPSP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1156 211 SMART rrm1_1 17 90 IPR000504 GO:0003723
Dere09g1156 211 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 203 - -
Dere09g1156 211 Gene3D - 11 193 IPR012677 -
Dere09g1156 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Dere09g1156 211 MobiDBLite consensus disorder prediction 171 190 - -
Dere09g1156 211 SUPERFAMILY RNA-binding domain, RBD 12 102 IPR035979 GO:0003676
Dere09g1156 211 MobiDBLite consensus disorder prediction 100 211 - -
Dere09g1156 211 MobiDBLite consensus disorder prediction 100 115 - -
Dere09g1156 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Dere09g1156 211 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1156 Dere-ChrDere09 15170633 15171268 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1156 14 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.524 1.43e-08 52.0