Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1152 ATGTCGCACTTTGGAAGATCTGGCCCTCCTGACATTAGAGACACCTATTCCCTTCTAGTCCTCAATATCACTTTCCATACAACCGCTGATGATCTTTACCCCCTTTTTGACAAGTACGGCAAGGTTGTCGATGTCTTCATCCCCAAAGACCGAAGGACTGGCAAATCACGAGGTTTCGCGTTTGTTTGTTATAAGTATGCCGATGAGGCACAGAAGGCAATGGATAAGATTTATGGAAGAGTCATCGATGGAAGAGAAATTATGGTTCAATTCGTAAAATACGGACCTAATGTTGAGAAAATTCACAAGGGCAGGATAATGGAAGCATCCTCGAAGCCAAGAGGGCGGCCTAGAAGCCATAGCCCTCATCCTAGGCACAGGGATGAATATAGAGGAAGAGATGACAAAGAGCAACGAACCAGAAGGCAATCATATGATAGTGCATCGACTCCAGCTCGGCATGGCCCCAGTCCTCATAAAAGTCCATCTCCACAAATGAGGTCTTCTCGGGATGGATCACATGATGAACTGATAGTCATAAGTTATCACCTGCTCAAAAGGATGTTTCACCACATGGTCATCCTGATTGGCGCAACCATTTGGCTATTGAAAATAGCATTAGTGAAGGTTCTTGCATCGTCGTTCCACGTGGCAACTTTCTTTGGCAGGATGAAAGAGAGCGTTTTCCATCATTATGTGTTGGAGGCACTGTCGGGGCCACCATTGGAGGAGGCGGAGATGGAGCTGACACGACGACACTTGCAGGCGTCGAAGTCGTTGACAGCTAGGTTGAGGTATGGAAAGTTTGGGCCGTTGTCGAGGTCGAAGAAAGGAGACCGAGCCAAGGAGAAGGAGTGA 858 0.4732 MSHFGRSGPPDIRDTYSLLVLNITFHTTADDLYPLFDKYGKVVDVFIPKDRRTGKSRGFAFVCYKYADEAQKAMDKIYGRVIDGREIMVQFVKYGPNVEKIHKGRIMEASSKPRGRPRSHSPHPRHRDEYRGRDDKEQRTRRQSYDSASTPARHGPSPHKSPSPQMRSSRDGSHDELIVISYHLLKRMFHHMVILIGATIWLLKIALVKVLASSFHVATFFGRMKESVFHHYVLEALSGPPLEEAEMELTRRHLQASKSLTARLRYGKFGPLSRSKKGDRAKEKE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1152 285 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 160 - -
Dere09g1152 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Dere09g1152 285 MobiDBLite consensus disorder prediction 103 171 - -
Dere09g1152 285 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Dere09g1152 285 MobiDBLite consensus disorder prediction 122 143 - -
Dere09g1152 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 87 IPR000504 GO:0003723
Dere09g1152 285 CDD RRM_SRSF2_SRSF8 18 90 - -
Dere09g1152 285 Gene3D - 8 149 IPR012677 -
Dere09g1152 285 SMART rrm1_1 17 90 IPR000504 GO:0003723
Dere09g1152 285 MobiDBLite consensus disorder prediction 144 168 - -
Dere09g1152 285 SUPERFAMILY RNA-binding domain, RBD 9 117 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1152 Dere-ChrDere09 15017811 15018794 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1152 192 251 Mechanosensitive Ion Channel Family AT2G17000 51.667 2.42e-15 74.3