Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1125 ATGGCGGATTCTCCCCTCAGAAGGACCACAAGGTCCCCGTCCCCGTGGAGAGCTCAGTCAAGATCGAGGTCCAGGTCAAGGACTCCACCTAGGGCTAGATCCAGGTCTCGGTCTCGATCAAGATCCTGGTCAAGACATCGGCCAAGGTCCCGTTCAAGAAGCCGTGGCAGATCAAGGTCAAGAAGTCATGGAAGGGCTGAAGCTGTAAATCCAGGGAATACACTCTATGTTACTGGCCTATCTTCGAGGGTCACCGAGAGGGACCTAGAAGAGCACTTTTCTAAGGAGGGAAAGGTCGCTTCCTGTTTTCTTGTGGTGGAGCCTCGTACTCGTATTTCCCGTGGTTTTGCTTTTGTTACGATGGATTCTGCTGAGGATGCAGACCGCTGCATCAAGTATCTTAATCAATCTGTTCTTGAAGGTCGCTATATTACAGTTGAACTGTCACGGAGGAAAAGGCCTAGAACTCCAACTCCAGGACACTATCTTGGGCTGAAAAGTACTAGGGACTATGGTTACCGTGGTGACCGTGGACGGTACCGTGGTGGGTCTAGTCGTGATGACTATCCTTACCGTAGGTCTCCAAGGCGCTCACCATACAGAGGTGGTCGTGATTCATCACTGCGGCACTCACCCTATGGTGGAAGATCTCGGAGGGACAGATCAAGGTCACTCCCTTATTCTCCTTATGGCAGCCCTGACAGGAAGTATGCTCGAGGGTCTAGGTGA 729 0.5185 MADSPLRRTTRSPSPWRAQSRSRSRSRTPPRARSRSRSRSRSWSRHRPRSRSRSRGRSRSRSHGRAEAVNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSAEDADRCIKYLNQSVLEGRYITVELSRRKRPRTPTPGHYLGLKSTRDYGYRGDRGRYRGGSSRDDYPYRRSPRRSPYRGGRDSSLRHSPYGGRSRRDRSRSLPYSPYGSPDRKYARGSR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1125 242 MobiDBLite consensus disorder prediction 1 74 - -
Dere09g1125 242 CDD RRM_SF 75 147 - -
Dere09g1125 242 SUPERFAMILY RNA-binding domain, RBD 68 183 IPR035979 GO:0003676
Dere09g1125 242 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 62 224 - -
Dere09g1125 242 MobiDBLite consensus disorder prediction 170 204 - -
Dere09g1125 242 Coils Coil 241 242 - -
Dere09g1125 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Dere09g1125 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Dere09g1125 242 Gene3D - 14 158 IPR012677 -
Dere09g1125 242 SMART rrm1_1 74 147 IPR000504 GO:0003723
Dere09g1125 242 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
Dere09g1125 242 MobiDBLite consensus disorder prediction 150 242 - -
Dere09g1125 242 MobiDBLite consensus disorder prediction 1 23 - -
Dere09g1125 242 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1125 Dere-ChrDere09 14696586 14699232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1125 72 155 Eukaryotic Initiation Factors Gene Family AT1G49760 35.714 3.45e-09 54.7