Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1105 ATGTCAAAGGAATTGAGTGAAGAGGGACAAAGTCAAACACATATCAATGAAGAGAGGCATGGGAAGGACTACGTCGTCCCTCCTGCAGTAGCTGTGATGGACATGAGTGAACTCAAACGCTGGTCCTTCTATAGAGCTCTGATAGCTGAGTTTGTGGCTACCCTTCTCTTTCTTTACGTTACTGTAGCCACCGTCATGGGCCACAAGATTCAAACCCGACCCTGTGATGGCGTTGGCCTTCTCGGCATCGCCTGGTCCTTTGGTGGCATGATCTTCATTCTTGTCTACTGCACTGCTGGAATCTCCGGGGGGCATATAAACCCTGCCGTTACGCTGGGGCTACTGGTAGCTAGGAAGGTGTCCTTGGTTAGGGCAGTGGCCTACATGGTGTCACAGTGCATGGGAGCTGTTTGTGGGGTGGCCATAGTGAAAGCCTTTACGAAGAATTACTATAATATGCTTGGGGGTGGTGTCAATGCAGTTGCAGCTGGCTACTCTAAGGCCAATGCTTTGGGAGCTGAAACCATTGGTACTTTCGTGCTCGTTTACACTGTCTTCTCAGCCACTGATCCCAAAAGGAACGCACGTGACTCCCACGTTCCTGTTTTGGCTCCATTACCCATAGGTTTTGCTGTGTTTATGGTGCATTTAGCTACCATTCCTATCACTGGTACTGGCATCAACCCTGCCAGGAGTTTTGGTGCTGCACTTGTCTACAACGATGGCAAAGTATGGGATGATCAGTGGATCTTCTGGGTTGGACCCTTCCTTGGGGCAATGCTTGCAGCAGCATACCACCAATACATACTGAGAGCAGGAGCTGCGAAGGCTTTGGGGTCTTTTCGTGGCCATCACACCCGTTAA 864 0.5023 MSKELSEEGQSQTHINEERHGKDYVVPPAVAVMDMSELKRWSFYRALIAEFVATLLFLYVTVATVMGHKIQTRPCDGVGLLGIAWSFGGMIFILVYCTAGISGGHINPAVTLGLLVARKVSLVRAVAYMVSQCMGAVCGVAIVKAFTKNYYNMLGGGVNAVAAGYSKANALGAETIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAALVYNDGKVWDDQWIFWVGPFLGAMLAAAYHQYILRAGAAKALGSFRGHHTR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1105 287 Gene3D Glycerol uptake facilitator protein. 30 287 IPR023271 -
Dere09g1105 287 NCBIfam MIP family channel protein 49 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 CDD MIP 45 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 274 IPR034294 -
Dere09g1105 287 FunFam Probable aquaporin PIP1-2 30 285 - -
Dere09g1105 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Dere09g1105 287 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 Pfam Major intrinsic protein 37 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g1105 287 SUPERFAMILY Aquaporin-like 36 271 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1105 Dere-ChrDere09 14487173 14488863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1105 1 287 Major Intrinsic Protein MIP AT4G35100 78.746 1.89e-169 468