Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1076 ATGGCTCAGCCCACAAACGGTACGGATCTGAATCAGCAGCAGCACCAGCAGCACTACCAGCACCAATGGATGGCTATGGAGTACCCTGCTGCTGCCACGGCCATGATGCAGCAGCAGATGATGATGTATCTGCAACATTACATGCCTTACGTCCACCATTATCTACCTCTTCCTCCTCAGCAGCAGCAGCAGCAGCTCAAGTCGCAGCCGCCGCCCTATCAGCCGCAGCAGCAGCAGCAGAAGCAAGGGTCCACTGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACCTCCACAACTGTTTTGCTCATACGGGTGAGGTTTTATCTGCCAAGGTTATACGAAATAAGCAAACTGGCCAGTCAGAGGGGTATGGATTTGTTGAGTTTTATTCGCGCGCAATAGCTGAGAAGATTTTGAACAGCTATAATAATACTATGATGCCAAATACTGATCAGTCCTTTCGTCTGAATTGGGCTACATTCAGTGCTGGTGATAGGAGAATAGATGCAAGTTCTGACCTGTCTATATTTGTTGGGGACTTCGCTGTAGATGTTCCTGATGCCATGCTGCAGGAAACCTTTGCTAGTAGATATTCATCTGTTAAGGGAGCAAAAGTTGTCTTTGATTCTAATGCTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGGGATGAAAATGAGAGGTCTAGGGCCATGACTGAGATGAATGGATTCTATTGTTCAAGTAGGCCTATGCGAATAGGTGTTGCAACCCCAAAGAAATCCTATGGATATCAGCAACAGTATTCTTCCCAAGCTGTGGTATTAGCTAATGGACATTCATCTAATGGTGCTACCAACCAAGACAACCATTCTTGCAATTTGGTGAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGAGAGTGCATCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACGGATTCTAACGGAGGTCATCATGGAGGCCATGGGTATGCTATGAGACAAAACTAG 1056 0.465 MAQPTNGTDLNQQQHQQHYQHQWMAMEYPAAATAMMQQQMMMYLQHYMPYVHHYLPLPPQQQQQQLKSQPPPYQPQQQQQKQGSTDEIRTIWLGDLHHWMDENYLHNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYSRAIAEKILNSYNNTMMPNTDQSFRLNWATFSAGDRRIDASSDLSIFVGDFAVDVPDAMLQETFASRYSSVKGAKVVFDSNAGRSKGYGFVRFGDENERSRAMTEMNGFYCSSRPMRIGVATPKKSYGYQQQYSSQAVVLANGHSSNGATNQDNHSCNLVRKNAEEAIQALNGTVIGKQRVHLSWGRSPGNKHWRTDSNGGHHGGHGYAMRQN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1076 351 SMART rrm1_1 90 165 IPR000504 GO:0003723
Dere09g1076 351 SMART rrm1_1 183 257 IPR000504 GO:0003723
Dere09g1076 351 MobiDBLite consensus disorder prediction 324 351 - -
Dere09g1076 351 SUPERFAMILY RNA-binding domain, RBD 53 171 IPR035979 GO:0003676
Dere09g1076 351 SUPERFAMILY RNA-binding domain, RBD 182 328 IPR035979 GO:0003676
Dere09g1076 351 MobiDBLite consensus disorder prediction 60 85 - -
Dere09g1076 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Dere09g1076 351 FunFam Polyadenylate-binding protein RBP47B 170 272 - -
Dere09g1076 351 Gene3D - 177 281 IPR012677 -
Dere09g1076 351 CDD RRM2_SECp43_like 181 260 - -
Dere09g1076 351 CDD RRM1_SECp43_like 90 170 - -
Dere09g1076 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Dere09g1076 351 FunFam Polyadenylate-binding protein RBP47B 88 168 - -
Dere09g1076 351 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 78 330 - -
Dere09g1076 351 Gene3D - 48 176 IPR012677 -
Dere09g1076 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 254 IPR000504 GO:0003723
Dere09g1076 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1076 Dere-ChrDere09 13941126 13942240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1076 81 298 Eukaryotic Initiation Factors Gene Family AT1G49760 26.606 8.33e-16 76.6