Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1064 ATGGTTGCTAAAGATAGAGACGAAATCTCTTCTGAAAATTCTGTATATTCACCAGGTTCAAGCTCTCCAATGGGTAGCAAGTGCAGATTTGCGATTGATAGATTATGGGATTTTGCCACTTCTTGGAAGAGAAGCAGCTCACCACGTGGTCGAAGAATTTTCCACAGAGATGTGGAACAAGAAGAATTCCAGTATGCCAGTACTCAGTGCCTCTCATCGTACTACAGTGTGTTTGTGGTTCGCCTGGCAATCATGGTCATGCTAGCTATCTTGATTGGGCTGCTCACTATATTAACATGGCACTTCACGAAGATTTATACAGCAAAATCACTTGATAGCTTAGCATATGGCCTTCGTTATGAATTACTTCAACGCCCCATCTTACGGATGTGGAATATTTTGAATTCCACTGCTGAAATTACAACAGCTCAGGTTAAGCTGTCTGAGTATGTAATCAGACGGTACAGCAACCCTGCCAATCAAGCAGAGCAAGTTGAGCAGCTGTATGAATCTATGAGGGCTGTAACCTGGGCACTCTTTTCTAGTCGCAAGGCACTCAATTCAATAACTATCAATTACAGGAACGGGTTTGTTCAGGCATTTCACAGAGATCTTAAGGGTAACAATACCTTTTACATCTACTCTGATCTCGCAAACTACTCCATAGGTGCCAGTGCGTCCAATGAGATCAACTCACTTTCAACACATCAAGCTTGGAATGATGAAGCCATTCATGGTAACAATTCTGCAATTTGGTATCGCGAACCACTTGACCCTATTAGTGGTGAGAAGATTGGAAAAGCTAAGCAGATTGCACCGGAAGATTTGATAAATATTGCTGGCCTTTCTCAAGTTCCTGATGGGGTAGCTTCGTGGCACGTTGCTGTGAGCAAGTTTACAGATTCACCGTTGCTTTCTGCTGCACTGCCAGTTTGGGACTCCACCAATAAGAGCATCGTGGCTGTTGTGGGTGTCACAACAGCACTTTATAGTGTTGGCCAGCTAATGAAAGAACTAGTTGAGTTTCATAGTGGTTACATCTATTTGACCTCGGAAGAGGGTTACTTACTTGCCACTTCCACAAATGCTCCACTGCTAACAAATTCAACAGAACCACTCAAGCTTAAGATGGCCGTTGAAAGTGAAGATGATGTAATACGATTGGGAGCCCAGTTGCTGAAGAAAACATATGGGAACAATTTTCCTCCAAGTCATGAGGTTCACGTAGAGAATGTCAGGCTAGGCCACCAGCTGTATTACATTGACTCATTCTTTCTAAATTTGAAGAGACTTCCTCTGGTGGGTGTTATCATTATACCAAGGAAGTATATTATGGGGAAGGTAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCGTTATGTATTCTAGTCATTGGATGCGTTTGCATTTTGATACTAACAAATGGGGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAACAACTATAAAAGTCAGTTTCTAGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGCTCAACTGCCTTGCTCCGTCTTCTCAACAACATCTTGGATCTGAGCAAGGTGGAATCCGGGAAGTTAGTGTTAGAAGAAGCGGAATTTGACTTGGGACGGGAACTTGAAGGACTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAATGTAGAGACTGTTTTGGACCTGTCAGATGATATGCCAAAAGTAGTTCAGGGTGATTCTGCCAGGGTTGTTCAAATTTTTGCAAATCTGATCAACAATTCCATAAAGTTTACTCCGTTGGGTCACATTATTCTGCGAGGATGGTGCGAGAACCCAAATTTGTCCAGTGATAGTACAAAGTTTCCTCTTAATCAGAAGTCACGGATTCCACAAAAGATCAGAATGAAGCAACATGAAAACCATGCAAAGAAGGCATCTAAGAAAGAGAACAAAATGATTCTTTGGTTTGAAGTAAATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGTTTTGAACAAGCAGATCCATCAACTACTAGACTGCACGGAGGCACTGGTCTTGGACTCTGCATTGTGAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAAGGCCCAGGAACTCTGATGCGATTATACCTGCTTCTCAGTACACCCAAGGATGCCACAGAACAGTATTGCCGAGTAGATTATGCAGAGAATGAATTAGTGGTATTGCTTGCACTACATGGAAACATGGGTCGATCAATCACATCTAAGTGGTTACAAAAAAATAGGGTGTGCACTCTGGAGGCATCTGAATGGAATGTACTAACACAAATTCTGAGGGAACTCTTCCATGCAAATAGTTCAGTCCACAATAATGGTTTTGATGCACATCTTCCAATAAATGATAGTTTGAAGTCCAAATTACTCAACATAGAAGAAATGAGGAATCCAACATTTGTGATTGTTGTTGACATAGGACTACTTGATTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTCCACAAGTACTTTGGGAGAGCAAAATTCGCATGGGTGCTAAATCACGACACCTCCAATACCATAAAGACGGAGCTTCGCAGGAAAGGGCATATATTGATGGTCAACAAACCCCTCTACAAAGCCAAAATGATTCATATTTTGGAAGCTGTCATAAAGGAGAAAAATCTTGAGCTACAAAAGAACAATATGACTGCTTCGAGAACCACAATGAGAGAGGGAGATGTGCATGAGTTTCTAGAGATTGATTCTACTCATTTTGATGGTGCTAGCTCTGATGATTCTGACATATCTGAAGTGGGTGGTTCTAATAGTGCCAATAAAGATAAAGAAAGGGAAATGATTGTAAAATCCCATCCATCGTCACAATACCAGATACAGAACTGCTTAGTTGGATTGACCAATGAATACTCAGAAGATAACATTTCCAGGAAAGAAGAGTCATGTCAAAGCAGCCCCAACTCCCACAACAACCTTGAAGATGTGGAAACTAAATTACAGCCCTCTCAACAAGCATCCTTTCCAACGGAAGCTTTAGGAAAAGATTCTGAATGTGGGGAAACAAATAGAGTCACTTGCTCAAGTAAAGCTGTAAATGGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGACACTCCAGTACTTCAGAGGGTTGCAACCATAATGCTGGAAAAAATGGGAGCTACAGTAGTCGTAGTAGGTGATGGACAACAGGCAGTGGATGCTCTGAATTGCATGCCTGGCGCTGAAGATAGTAGAATGGAATCTCTCATGAAGGAGAGAAGCACAATATCTCAAACTGAAATTTTCAGTTGTCCACAATATGACTTAATCCTTATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCAACACAAGCAATCAGGAAATCAGAAGCAGGAACTGGCATGCACATTCCCATTGTTGCTCTTACAGCCCATGCGATGTCATCTGATGAAGCTAAGTGCCTGGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAGCTGATGGTGTCCACCATTCTTTCACTCACTAAAAGAACATCCTGA 3744 0.414 MVAKDRDEISSENSVYSPGSSSPMGSKCRFAIDRLWDFATSWKRSSSPRGRRIFHRDVEQEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLDSLAYGLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRRYSNPANQAEQVEQLYESMRAVTWALFSSRKALNSITINYRNGFVQAFHRDLKGNNTFYIYSDLANYSIGASASNEINSLSTHQAWNDEAIHGNNSAIWYREPLDPISGEKIGKAKQIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSTNKSIVAVVGVTTALYSVGQLMKELVEFHSGYIYLTSEEGYLLATSTNAPLLTNSTEPLKLKMAVESEDDVIRLGAQLLKKTYGNNFPPSHEVHVENVRLGHQLYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASNNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVQGDSARVVQIFANLINNSIKFTPLGHIILRGWCENPNLSSDSTKFPLNQKSRIPQKIRMKQHENHAKKASKKENKMILWFEVNDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLLLSTPKDATEQYCRVDYAENELVVLLALHGNMGRSITSKWLQKNRVCTLEASEWNVLTQILRELFHANSSVHNNGFDAHLPINDSLKSKLLNIEEMRNPTFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFAWVLNHDTSNTIKTELRRKGHILMVNKPLYKAKMIHILEAVIKEKNLELQKNNMTASRTTMREGDVHEFLEIDSTHFDGASSDDSDISEVGGSNSANKDKEREMIVKSHPSSQYQIQNCLVGLTNEYSEDNISRKEESCQSSPNSHNNLEDVETKLQPSQQASFPTEALGKDSECGETNRVTCSSKAVNGKKSLEGLRILLAEDTPVLQRVATIMLEKMGATVVVVGDGQQAVDALNCMPGAEDSRMESLMKERSTISQTEIFSCPQYDLILMDCQMPKMDGYEATQAIRKSEAGTGMHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTKRTS 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1064 1247 Gene3D - 1077 1245 - -
Dere09g1064 1247 ProSiteProfiles Response regulatory domain profile. 1098 1243 IPR001789 GO:0000160
Dere09g1064 1247 PANTHER TWO-COMPONENT HISTIDINE KINASE 62 774 - -
Dere09g1064 1247 FunFam Histidine kinase 1-like protein 495 574 - -
Dere09g1064 1247 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 562 767 IPR036890 -
Dere09g1064 1247 Pfam His Kinase A (phospho-acceptor) domain 508 573 IPR003661 GO:0000155|GO:0007165
Dere09g1064 1247 CDD HisKA 508 569 IPR003661 GO:0000155|GO:0007165
Dere09g1064 1247 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 574 IPR036097 GO:0000155|GO:0007165
Dere09g1064 1247 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310|GO:0016772
Dere09g1064 1247 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310|GO:0016772
Dere09g1064 1247 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310|GO:0016772
Dere09g1064 1247 SUPERFAMILY CheY-like 1095 1244 IPR011006 -
Dere09g1064 1247 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 620 769 IPR003594 -
Dere09g1064 1247 Gene3D - 575 774 IPR036890 -
Dere09g1064 1247 MobiDBLite consensus disorder prediction 977 1000 - -
Dere09g1064 1247 MobiDBLite consensus disorder prediction 1037 1067 - -
Dere09g1064 1247 MobiDBLite consensus disorder prediction 1032 1076 - -
Dere09g1064 1247 ProSiteProfiles Histidine kinase domain profile. 514 771 IPR005467 -
Dere09g1064 1247 Gene3D - 495 574 - -
Dere09g1064 1247 SMART HKATPase_4 620 771 IPR003594 -
Dere09g1064 1247 CDD REC_hyHK_CKI1_RcsC-like 1099 1239 - -
Dere09g1064 1247 Pfam Response regulator receiver domain 1099 1238 IPR001789 GO:0000160
Dere09g1064 1247 SMART HisKA_10 507 573 IPR003661 GO:0000155|GO:0007165
Dere09g1064 1247 SMART REC_2 1097 1239 IPR001789 GO:0000160
Dere09g1064 1247 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1064 Dere-ChrDere09 13521038 13528232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1064 22 1244 Histidine Kinase Gene Family AT2G17820 65.670 0.0 1592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere09g1064 HATPase_c 3.3e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1064 09 13521038 13528232 Dere13g0752 13 9429920 9438643 CCT
Dere09g1064 09 13521038 13528232 Dere09g1064 09 13521038 13528232 ECH