Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1052 ATGGCGGAGGAGAGATCCACTGGTGTGGTTCAGTGGTTCAACGATGCTAAAGGCTTTGGCTTTATCAAGCCTGACGATGGAGGAGAAGATCTCTTTGTTCATCAATCTTCCATCATATCCGAAGGATATCGTAGTCTTGTTGAAGGCGATCGCGTCGAGTTCTTGATTGCCTCCGGTGACAACGAGAAAACCAAAGCCATTGATGTCACTGGCCCCAACGGAGCTCCTCTGCAATCTAAGAAAGATAGTTACGGTGGCCGCGGAGGCGGTGATGGGGGCTATGGCTTTAGCGGTGGATGGAGAGGCGGGGATAGGCGCAGCAGCGGGGGAGCTGGTGGTGCCGGCTGCTATCATTGCGGTGATGTTGGGCACTTGGCCAGGGATTGCAACCGGGGCAACAATACGGGTGGCGCTTCTTGTTTTAAATGTGGCGAAATTGGGCACTTGGCAAGGGACTGCTCGCGTGGAAACAATAGTGGCGGCGGCGGCAGTGGGTCTTGCTTTAGGTGTGGAGAGTATGGGCACATGGCGAGGGATTGCACCAAGGAAAGCAGTGGTGGCGGGGGCGGTGGTGGGGGTTGCTTCAGATGTGGGGAAGTAGGTCACTTGGCCAGAAATTGCAGCAAAGACGGCGGAAGGTATGGCAGCAGCGGTAGCGGCGGTGGTGCTGGAGGAAATACATGCTTTAATTGTGGGAAGCGTGGGCATTTCGCGAGAGAGTGCCCTGAAGTCTCAGGATGA 741 0.5547 MAEERSTGVVQWFNDAKGFGFIKPDDGGEDLFVHQSSIISEGYRSLVEGDRVEFLIASGDNEKTKAIDVTGPNGAPLQSKKDSYGGRGGGDGGYGFSGGWRGGDRRSSGGAGGAGCYHCGDVGHLARDCNRGNNTGGASCFKCGEIGHLARDCSRGNNSGGGGSGSCFRCGEYGHMARDCTKESSGGGGGGGGCFRCGEVGHLARNCSKDGGRYGSSGSGGGAGGNTCFNCGKRGHFARECPEVSG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1052 246 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 SMART c2hcfinal6 193 209 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 SMART c2hcfinal6 227 243 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 SUPERFAMILY Retrovirus zinc finger-like domains 210 244 IPR036875 GO:0003676|GO:0008270
Dere09g1052 246 ProSiteProfiles Zinc finger CCHC-type profile. 167 182 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 ProSiteProfiles Zinc finger CCHC-type profile. 194 209 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Dere09g1052 246 SMART csp_8 7 72 IPR011129 GO:0003676
Dere09g1052 246 MobiDBLite consensus disorder prediction 66 88 - -
Dere09g1052 246 Gene3D - 1 83 IPR012340 -
Dere09g1052 246 ProSiteProfiles Zinc finger CCHC-type profile. 116 129 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Dere09g1052 246 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Dere09g1052 246 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Dere09g1052 246 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Dere09g1052 246 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Dere09g1052 246 Gene3D - 190 216 - -
Dere09g1052 246 Gene3D - 134 162 - -
Dere09g1052 246 Gene3D - 163 189 - -
Dere09g1052 246 Gene3D - 223 246 - -
Dere09g1052 246 Pfam Zinc knuckle 140 154 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 Pfam Zinc knuckle 193 209 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 Pfam Zinc knuckle 226 243 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 Pfam Zinc knuckle 166 182 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 Pfam Zinc knuckle 115 129 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Dere09g1052 246 SUPERFAMILY Retrovirus zinc finger-like domains 156 210 IPR036875 GO:0003676|GO:0008270
Dere09g1052 246 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Dere09g1052 246 ProSiteProfiles Zinc finger CCHC-type profile. 228 243 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 SUPERFAMILY Retrovirus zinc finger-like domains 108 156 IPR036875 GO:0003676|GO:0008270
Dere09g1052 246 ProSiteProfiles Zinc finger CCHC-type profile. 140 153 IPR001878 GO:0003676|GO:0008270
Dere09g1052 246 Gene3D - 94 133 - -
Dere09g1052 246 PANTHER COLD SHOCK DOMAIN PROTEIN 2 185 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1052 Dere-ChrDere09 13377344 13378084 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dere09g1052 CSD 1.2e-24 CL0021