Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1043 ATGGATTATTGGAAGCCTGAAGATATGTCTAAATCTATATCTGTTGCAGCAGATTTAGCACCTTCTTCGCTTCAGCCTCAGTCTCAGCTTGTTACTGTCACCTCTAATCGCATGCAGAACTCGCATACCGAATCCAGGCAGAGGCCTGAAGCTGAGGCACAGGATCCAGTCGCTGCAAGAAAGCTTCAGAAGGCAGACCGCGAGAAACTGAGGAGGGATCGACTAAATGAGCATTTCCTAGAGCTGGGAAACTCATTAGACCCTGATAGGCCAAAGAATGACAAGGCAACTATTCTTACAGACACAATTCAAGTGCTAAAAGATTTAACTGCAGAAGTCAATAGACTAAAAGCTGAGCATGCAGCACTTTCTGAAGAATCACATGAACTAATGCAAGAGAAGAATGAACTCAGAGAAGAGAAGACATCTCTAAAATCTGATATTGAAAATCTTAATGCCCAATACCAGCAGAGAGTCAGAGTCACGTTCCCATGGACTGCTATAGATCATTCAGTTGTCATGGCTCCACCTTATTCATATCCAGTTCCTATACCCATCCCTCCTGGTCCAATTTCCCTTCATCCATCACTTCAGCCTTTTCCCTACTTTGGAAACCAAAATCCAGGTCCAATTCCCAATCCCTGCTCCACATATGTCCCCTTTTCCGCTCCACCTAATCCCCCAGTCGAGCAGCCAACTGGCCAGTATGCTTCCACGTCCCACATTTCAAGCAAACAAGATTCCAGAAGTAAGTCACCAGACCATGAAAGGCCCAGCAATGCTGAAAGGTGTGGTGAGTCTAACGATGTAGCTACGGAGCTTGAACTTAAGATGCCAGGATCATCAACGCGACAGGAATCATCTTTTGGAGTAAGGAAGGGCAAGCATTCAACAAGGAAGGAGAGAAATATAACAGATGGGAGTGCTTCAAGCAGACATTCTTCATCTCAAGCACTTCAAGATAGCTCTAATAGCGTGGGTGACATCCCAAAGGCTGATAAATGA 1005 0.4507 MDYWKPEDMSKSISVAADLAPSSLQPQSQLVTVTSNRMQNSHTESRQRPEAEAQDPVAARKLQKADREKLRRDRLNEHFLELGNSLDPDRPKNDKATILTDTIQVLKDLTAEVNRLKAEHAALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRVTFPWTAIDHSVVMAPPYSYPVPIPIPPGPISLHPSLQPFPYFGNQNPGPIPNPCSTYVPFSAPPNPPVEQPTGQYASTSHISSKQDSRSKSPDHERPSNAERCGESNDVATELELKMPGSSTRQESSFGVRKGKHSTRKERNITDGSASSRHSSSQALQDSSNSVGDIPKADK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1043 334 SMART finulus 65 115 IPR011598 GO:0046983
Dere09g1043 334 MobiDBLite consensus disorder prediction 289 307 - -
Dere09g1043 334 PANTHER TRANSCRIPTION FACTOR BHLH121 25 332 IPR044579 GO:0003700|GO:0006879
Dere09g1043 334 CDD bHLH_AtILR3_like 64 138 - -
Dere09g1043 334 MobiDBLite consensus disorder prediction 308 327 - -
Dere09g1043 334 MobiDBLite consensus disorder prediction 214 334 - -
Dere09g1043 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Dere09g1043 334 MobiDBLite consensus disorder prediction 43 70 - -
Dere09g1043 334 MobiDBLite consensus disorder prediction 214 231 - -
Dere09g1043 334 MobiDBLite consensus disorder prediction 19 70 - -
Dere09g1043 334 Gene3D - 58 135 IPR036638 GO:0046983
Dere09g1043 334 MobiDBLite consensus disorder prediction 232 246 - -
Dere09g1043 334 Coils Coil 99 154 - -
Dere09g1043 334 MobiDBLite consensus disorder prediction 247 263 - -
Dere09g1043 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 130 IPR036638 GO:0046983
Dere09g1043 334 Pfam Helix-loop-helix DNA-binding domain 60 109 IPR011598 GO:0046983
Dere09g1043 334 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1043 Dere-ChrDere09 13342591 13345878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1043 50 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.259 8.87e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1043 HLH 1.6e-08 No_clan