Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1042 ATGGGTACCTGCTTTTCTTCCACGAAAGTAAGTGGCTCCAACAGCAATACCACAGCTACCGGCGCCACCGCCGTCAACCACAACCGCAGAGAGAGTGCGAAGCCTCAGACACGCACAACGACGGTTAAATCTCAAGCGTCAAACGATCAACGGCCAAAAGTACGGAATGAGACCCAGAACACTCAGCCGAAGAAGTATTCACAGCAACATAAGACCAAAGATAAGCCAAATCCCAAGCGCCAACCATGTGGGAAACGCACCGATTTTGGCTATGACAAGGATTTTGATGCGCGGTACTCGCTCGGGAAATTGCTAGGACATGGTCAATTTGGTTACACATATGTAGGTGTAGATAAAGCAAATGGGGATCGGGTCGCGGTCAAGAGAATTGATAAGAGCAAGATGATTCTCCCGATTGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGAACTCACAGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTGAGGATGATTCATATGTATATATAGTTATGGAGTTATGTGAGGGGGGAGAACTGTTAGATCGGATATTGGCCAAGAAAGACAGCCGTTACACTGAAAAAGATGCAGCAGTGGTTGTAAGGCAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACTAGAGAAGATTCACCTTTGAAGGCTACAGATTTTGGTTTGTCAGATTTTATTAAACCTGGAAAGAAGTTTTACGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGCTGAAGCGCAGGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTAGTGGGAGGCGCCCTTTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGGCGGAAACCATGGCCTTCTATCAGTAACGCTGCAAAAGATTTTGTGAAGAAATTGTTAGTAAAGGATCCGCGGGCAAGATTAACTGCTGCTCAGGCTCTGTCTCATCCATGGGTTAGAGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTAAGCAACATGCGGCAATTTGTGAAATTTAGTAGATTCAAACAATTTGCACTGAGGGCCCTGGCTGGCACGCTTGATGAAGAAGAGTTGGCTGATCTCAGAGATCAATTTGATGCAATAGATGTGGACAAAAGTGGAGCTATTAGTCTAGAAGAGATGAGACTGGCTCTTGCTAAGGATATTCCTTGGAAGTTGAAAGATTCCCGTGTTCTTGAGATATTGCAAGCGATAGATAGCAACACAGATGGGCTTGTGGATTTCTCCGAGTTTGTGGCTGCTACATTACCCGTACATCAGTTGGAGGAACATGACACAGAGAAGTGGCACCACCTGTCACAAGCTGCTTTTGAGAAATTCGATATAGATAAAGATGGCTATATTACTCCAGAAGAACTTAGAATGCATACGGGCTTACGGGGTTCCATTGATCCGCTGCTTGAAGAAGCTGATATCGACAAAGATGGAAAAATCAGCCTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCCTCAGTTCAAAAAGTGTGACAACCCCACGGAGGACGTTAGATTAG 1677 0.4436 MGTCFSSTKVSGSNSNTTATGATAVNHNRRESAKPQTRTTTVKSQASNDQRPKVRNETQNTQPKKYSQQHKTKDKPNPKRQPCGKRTDFGYDKDFDARYSLGKLLGHGQFGYTYVGVDKANGDRVAVKRIDKSKMILPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKKFYDIVGSAYYVAPEVLKRRSGPESDVWSIGVITYILLSGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPSISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLSNMRQFVKFSRFKQFALRALAGTLDEEELADLRDQFDAIDVDKSGAISLEEMRLALAKDIPWKLKDSRVLEILQAIDSNTDGLVDFSEFVAATLPVHQLEEHDTEKWHHLSQAAFEKFDIDKDGYITPEELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASLSSKSVTTPRRTLD 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1042 558 Gene3D Transferase(Phosphotransferase) domain 1 185 377 - -
Dere09g1042 558 Gene3D - 385 539 - -
Dere09g1042 558 Pfam EF-hand domain pair 406 468 IPR002048 GO:0005509
Dere09g1042 558 Pfam EF-hand domain pair 488 540 IPR002048 GO:0005509
Dere09g1042 558 MobiDBLite consensus disorder prediction 1 88 - -
Dere09g1042 558 CDD EFh 487 541 IPR002048 GO:0005509
Dere09g1042 558 MobiDBLite consensus disorder prediction 37 66 - -
Dere09g1042 558 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Dere09g1042 558 SUPERFAMILY EF-hand 391 543 IPR011992 -
Dere09g1042 558 ProSiteProfiles EF-hand calcium-binding domain profile. 487 516 IPR002048 GO:0005509
Dere09g1042 558 Pfam Protein kinase domain 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1042 558 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Dere09g1042 558 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Dere09g1042 558 MobiDBLite consensus disorder prediction 67 88 - -
Dere09g1042 558 FunFam calcium-dependent protein kinase 28-like 185 378 - -
Dere09g1042 558 SMART efh_1 515 543 IPR002048 GO:0005509
Dere09g1042 558 SMART efh_1 485 513 IPR002048 GO:0005509
Dere09g1042 558 SMART efh_1 406 434 IPR002048 GO:0005509
Dere09g1042 558 SMART efh_1 443 471 IPR002048 GO:0005509
Dere09g1042 558 FunFam CDPK-related kinase 1 92 184 - -
Dere09g1042 558 CDD STKc_CAMK 98 358 - -
Dere09g1042 558 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Dere09g1042 558 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Dere09g1042 558 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Dere09g1042 558 SUPERFAMILY Protein kinase-like (PK-like) 98 372 IPR011009 -
Dere09g1042 558 PANTHER SERINE/THREONINE-PROTEIN KINASE 75 528 - -
Dere09g1042 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Dere09g1042 558 SMART serkin_6 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1042 558 FunFam Calcium-dependent protein kinase 28 400 469 - -
Dere09g1042 558 ProSiteProfiles Protein kinase domain profile. 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1042 558 ProSiteProfiles EF-hand calcium-binding domain profile. 519 546 IPR002048 GO:0005509
Dere09g1042 558 Gene3D - 378 469 - -
Dere09g1042 558 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Dere09g1042 558 MobiDBLite consensus disorder prediction 1 30 - -
Dere09g1042 558 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1042 Dere-ChrDere09 13325603 13329917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1042 1 553 EF-hand Containing Proteins AT2G17890 75.979 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere09g1042 Pkinase 1.2e-68 CL0016