Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1025 ATGCGGACTAGAAATGCTGATTCTTCCAAAACAAAGAAGACACCACCGACGAAGAAGTCCACATCTAAAAACCCCGCGAACTCAAAATCCCCCCAGACAAAGCGCTCGTCTACGATCAAAACGAGGCAGGCAAAGAAGAACGAGGCCTCGCCCGTACAAGACACAAGCTTTGATGAGAAACCGGAGCAGTCATCTGAGGAGGCAAAGGCAGCAGCTGATGCTTCTCTGCTGACCCAAGATGCAAAAGTTGCTACAGCTGCAAAGTCAACACAAAAGAGGGCACCAGGTAGACCTAGAAATTCAACCAAAGTAGTTTCCACCCAGAAACAGGGAGAACAAGTGGAGGGAATAGCTGTTGATACTACCAAAGTGGATGATTTTGTGGAAGCAGAGAAATTGCAGGAGCCTCGAAATGTTGGAGTAGCCAAAGCATATGAAAATGAAAGTGAAAAAGTGGGGGAGCAAGATGCTGGGTTTGTTGCACAATCAGCAGGGAATGAACAACAGCCCATGGATGGGGAAGAACTCAGTATTAAAAGTGCTTGTGCAATGGTAGAAAAGGAGAGTGATATAGTTGAAGTTGAAATATCTGCTTCTCAAGGTTCCCCCATTTCGTTTAATCAAGAAGAACCTAACATGGTGGAGTTCACTAAATCTCTAGAGAAAGAAGATTCCCCTTGTGCAAAAGAGCGAGAACAAGCAGAGGAAGAGGGCAGAGAAAAAGCATCAGAAAATCCAATGAAAGAGGAGACAAATAATATTGGACTTAATACTGATTCTGTCAACATGGAAATGAAAGACCAGGGAGAGCAAGTAAAGGAAGAGGTTGGAAAAAAACCATCAGAAAATTCAATGGAAGCGGATGGAGTAAAAGCATTGGATAAATCAATGGAAGAGGAGACAAATAATATTACACGTAACAAGGAATCTAATGTTGATTCAGTTGGGATTGAAATGGAGGACCAATTGCAGCAAGATGATGTTATACCTGAAAAGGAGAATCTTAGTGGTGATCAAGGAATCCAGGGTTATGGTGAAAAGATGGATCTTGGAGAACATGAGGAGGAGCTTATTGAGAATGATCCAGCAGAGCCACTTGAAGAAACTGAGGCATTGGATGAGGAGCGCAGGGAATTGTCAGCTATCGCAAGGGAGTGCAAGATTAGGAAAGAACATGAGATATTTGTTGGCGGGCTTGATCGTGATGCTACTGAAGAAGATCTGAAAAAGGTTTTCGAGAAGATTGGGGAGGTAGTTGAAGTCAGATTGCATAAAAATTCTTCAACAAATAAAAATAAGGGTTATGCTTTCGTAAAATTTTCTTGTAAGGAACATGCAAAGAAAGTGTTGTCTGAAATGAAAAATCCTGTTATACGTGGAAAACGATGTGGCACTGCACCGAGTGAGGATAATGACACATTGTTCTTGGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAAGATTATGGTATTGAGGGTGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAAGGATTAAGTCGGGGTTTTGCATTCCTTGAGTTCTCTTGTCATGCTGATGCCATGCTTGCATATAAGAGACTTCAAAAGCCTGATGTCATCTTTGGCCATGCTGAGCGAACTGCCAAAGTAGCCTTTGCTGAACCTGTACGAGAGCCTGATCCAGTGATAATGGCACAGGTGAAGTCTGTTTTTGTTGATGGTCTTCCACCTCACTGGGATGAAGACTGCATTAGGGAGCACTTTAAAGATTATGGTGAAATTGTACGAATAGTACTTGCCCGGAATTTGTCTACTGCTAAAAGGAAAGATTTTGGATTTGTTGATTTCTCTACACATGAAGCTGCTGTAGCATGTGTTGATGGTGTAAATGGTTCAGAATTTGTTGATGGGACCTCAAAGACAAAAGTGCGGGCAAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGTGGCATGTGTGGTGGGTTCCGAATTGGTCATGATAGGACTGGGCCCTTTCCAAGATCTGGAAGGGGTTTTGTGCAGGGAGGACATGCCTTCAATTGGGGAAACAGGGATCGGAATTTCTATCATGCAGGACATGGCCAAATTGGAAGAGTGGGTTTCCGGAATGACCTCGATCTTAATAATACATATCCAGATTTTCATCAGAGGCAATTTGGTATTCAAGGGGAAAGGATGATGCCTTTTGGGGGTGGACATTTTGCAGGTGGCCAAGGTGCTGCAGCAGTTGCTGGTCCATCTAGGCCTTATCTTGATAGAGCATGGTATGGCGCCCCTGAGAGAGGCCCTGGTGAGCCTATTCCCCTGAGGATGCCATTCTCCCAAGAAGGACAGTTTGACAGGCCTTATATGGGAAGGCATATTGACGATCCATATCTTTATGAAGACAACGTGCATGGGGTGAAACGGCCATTTTATATGACTGACCCAGATCCTAATTACATGGGGCCTGCTAGATTTCGTCCTCGATTGGAGTATACAGATCCGGCTGTATTTCATGGAAGTCGTTACCATGATTCTGCAGGGGCTGCCAGCCGACAGTATCCACGTGATTATTATGGTGCTGATTATGGTGGACGTCCATTCAAGAATTTATTGGTAAGCCAGGAAATACGAGAGGGGCTTCTCCAATTATGA 2673 0.4358 MRTRNADSSKTKKTPPTKKSTSKNPANSKSPQTKRSSTIKTRQAKKNEASPVQDTSFDEKPEQSSEEAKAAADASLLTQDAKVATAAKSTQKRAPGRPRNSTKVVSTQKQGEQVEGIAVDTTKVDDFVEAEKLQEPRNVGVAKAYENESEKVGEQDAGFVAQSAGNEQQPMDGEELSIKSACAMVEKESDIVEVEISASQGSPISFNQEEPNMVEFTKSLEKEDSPCAKEREQAEEEGREKASENPMKEETNNIGLNTDSVNMEMKDQGEQVKEEVGKKPSENSMEADGVKALDKSMEEETNNITRNKESNVDSVGIEMEDQLQQDDVIPEKENLSGDQGIQGYGEKMDLGEHEEELIENDPAEPLEETEALDEERRELSAIARECKIRKEHEIFVGGLDRDATEEDLKKVFEKIGEVVEVRLHKNSSTNKNKGYAFVKFSCKEHAKKVLSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPVREPDPVIMAQVKSVFVDGLPPHWDEDCIREHFKDYGEIVRIVLARNLSTAKRKDFGFVDFSTHEAAVACVDGVNGSEFVDGTSKTKVRARLSNPLPKTQAVKGGMCGGFRIGHDRTGPFPRSGRGFVQGGHAFNWGNRDRNFYHAGHGQIGRVGFRNDLDLNNTYPDFHQRQFGIQGERMMPFGGGHFAGGQGAAAVAGPSRPYLDRAWYGAPERGPGEPIPLRMPFSQEGQFDRPYMGRHIDDPYLYEDNVHGVKRPFYMTDPDPNYMGPARFRPRLEYTDPAVFHGSRYHDSAGAASRQYPRDYYGADYGGRPFKNLLVSQEIREGLLQL 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1025 890 Gene3D - 559 667 IPR012677 -
Dere09g1025 890 CDD RRM_SF 474 537 - -
Dere09g1025 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 472 557 IPR000504 GO:0003723
Dere09g1025 890 MobiDBLite consensus disorder prediction 52 67 - -
Dere09g1025 890 MobiDBLite consensus disorder prediction 218 247 - -
Dere09g1025 890 SUPERFAMILY RNA-binding domain, RBD 393 536 IPR035979 GO:0003676
Dere09g1025 890 MobiDBLite consensus disorder prediction 18 51 - -
Dere09g1025 890 FunFam Heterogeneous nuclear ribonucleoprotein Q 472 556 - -
Dere09g1025 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 572 636 IPR000504 GO:0003723
Dere09g1025 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 474 542 IPR000504 GO:0003723
Dere09g1025 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 394 462 IPR000504 GO:0003723
Dere09g1025 890 MobiDBLite consensus disorder prediction 94 112 - -
Dere09g1025 890 SMART rrm1_1 393 466 IPR000504 GO:0003723
Dere09g1025 890 SMART rrm1_1 473 550 IPR000504 GO:0003723
Dere09g1025 890 SMART rrm1_1 571 646 IPR000504 GO:0003723
Dere09g1025 890 CDD RRM_SF 394 463 - -
Dere09g1025 890 Gene3D - 346 465 IPR012677 -
Dere09g1025 890 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 860 - -
Dere09g1025 890 MobiDBLite consensus disorder prediction 1 112 - -
Dere09g1025 890 MobiDBLite consensus disorder prediction 266 306 - -
Dere09g1025 890 SUPERFAMILY RNA-binding domain, RBD 560 675 IPR035979 GO:0003676
Dere09g1025 890 CDD RRM_SF 572 636 - -
Dere09g1025 890 Gene3D - 471 556 IPR012677 -
Dere09g1025 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 470 IPR000504 GO:0003723
Dere09g1025 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 570 652 IPR000504 GO:0003723
Dere09g1025 890 MobiDBLite consensus disorder prediction 218 315 - -
Dere09g1025 890 MobiDBLite consensus disorder prediction 248 265 - -
Dere09g1025 890 FunFam Heterogeneous nuclear ribonucleoprotein Q 557 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1025 Dere-ChrDere09 13137696 13142107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1025 394 638 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 4.21e-16 80.9