Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1023 ATGTCGTCCATCGGAGAAGGTGATCCCCCGGTCGTTGAGCAACCTGCAGAGGAGCTTAAGCCAGCGACGAAGGAGAAGAAGTCCAAGGCTCCTAAAGAGAAGAAGCCCAAACAGGCCAAAGCGGCTTCTCATCCTCCGTATTTTCAGATGATTAAGGAAGCTTTACTGGCTCTGAGCGACAAGGGCGGTTCAAGCCCGTACGCCATAGCCAAATACATGGAGGAGAAGCATAAGTCGGTTCTGCCGGCGAATTTCAGGAAGATCTTGGGTCTTCAGCTGAAGAACCAAGCTGCGAGAGGGAAGCTTACCAAGATTAAGGGTTCCTACAAGCTATCTTCTGAAGCTGGCAAGAAAGATAAGGACAACACTGGCAAGGTCACAAGGTCCACAGCACAGAAAAATCAGCGTCCGAAACGAAGTGTGACTAAGAAAACGGAGACGGCTAAGAAGGCTGGGAAGGCGGCGAAGAAGGTTGGGGTGAAGAAGACGAAGAAATCATCCACTACTGGGAAGCCGAAGCAGCCCAAATCTATAAGGTCTCCTTCCAAGAGGGCCAGAAAAGCTACTGCCTCAGCTTCATGA 582 0.5069 MSSIGEGDPPVVEQPAEELKPATKEKKSKAPKEKKPKQAKAASHPPYFQMIKEALLALSDKGGSSPYAIAKYMEEKHKSVLPANFRKILGLQLKNQAARGKLTKIKGSYKLSSEAGKKDKDNTGKVTRSTAQKNQRPKRSVTKKTETAKKAGKAAKKVGVKKTKKSSTTGKPKQPKSIRSPSKRARKATASAS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1023 193 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere09g1023 193 PRINTS Histone H5 signature 164 181 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere09g1023 193 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere09g1023 193 PRINTS Histone H5 signature 132 146 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere09g1023 193 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere09g1023 193 MobiDBLite consensus disorder prediction 111 126 - -
Dere09g1023 193 CDD H15 41 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere09g1023 193 PANTHER HISTONE H1 20 186 - -
Dere09g1023 193 SUPERFAMILY "Winged helix" DNA-binding domain 41 122 IPR036390 -
Dere09g1023 193 MobiDBLite consensus disorder prediction 1 46 - -
Dere09g1023 193 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere09g1023 193 MobiDBLite consensus disorder prediction 106 193 - -
Dere09g1023 193 Gene3D - 38 125 IPR036388 -
Dere09g1023 193 MobiDBLite consensus disorder prediction 154 169 - -
Dere09g1023 193 MobiDBLite consensus disorder prediction 139 153 - -
Dere09g1023 193 Pfam linker histone H1 and H5 family 44 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1023 Dere-ChrDere09 13132464 13133128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1023 45 118 Single Myb Histone (SMH) Gene Family AT1G72740 41.892 1.03e-10 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1023 09 13132464 13133128 Dere09g1023 09 13132464 13133128 ECH