Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1019 ATGGTCATGCCTGCTCTTCTCTTTCTCTTGGTGCTCTGCGCACCGTTGTTATCGTGCGCCGAGCGAAGTGGAATCGCCATTGCTGAGATCGCAGCCTTGACCTCCTTCAAGCTCAACCTTCAGGATCCTCTCGGCGCTCTCAATGGTTGGGATCCCTCCACGCCGGCGGCTCCTTGCGACTGGCGTGGAGTTGCCTGCATCAACAACCGAGTCACCGAGTTGCGCTTGCCTCGGCTTCAACTTAGTGGCCGACTCACTGACCGCCTTTCCGACTTGCGCATGTTGCGGAAGCTGAGCCTTCGTTCTAACTCCTTCAACGGGACCATTCCTTCGTCGCTTTGCAAATGCACTTCCCTCCGTGCCGTGTTTCTGCAGTATAACTCACTCTCCGGGAATCTTCCTCCAGAGATCGGAAATCTCACCGGTCTTCAGATTCTAAATGTCGCGCAAAACCATCTCTCCGGCAGAATCCCTGGTGGCCTCCCGTTGAGTCTGAAGTACGTCGACCTCTCATCGAACTCTTTTTCTGGCGAGATTCCTAGCGCCATTGCTAATCTTTCTCAGCTTCAGCTAATCAACCTGTCGTACAACCAGTTCTCAGGCGAGATTCCGGCGCGATTTGGAGAGCTACAGCTGCTCGAATACCTCTGGCTTGATCACAATCTTCTAGGTGGAACTCTGCCTTCGGCCCTCGCTAATTGCTCTTCGCTCGTGCATCTGAGCGTAGAAGGAAATGTACTTGGAGGAGTGATTCCGGCGGCCATTGCAGCTCTTCCGAAGCTTCAGGTGATATCTCTCTCGCAGAATAATCTTACCGGTTCAATCCCGGCTTCCATTTTCTGCAACATTTCGGTCTACACGCCGTCGCTTCGAATCGTTCAACTAGGATATAATGGTTTTACGGATATTGTGGAGCCTGAGGGATCAACGTGTTTCAGTGTTGTTCAGGTTTTGGATATTCAGCACAATAGCATACATGGCAGGTTTCCGTTGTGGATAACGAATGTGTCCACTTTAACAATGCTTGATGTTTCGAGTAACGAATTTTCTCGCGAGATTCCGTCAGAAATTGGAAACCTCGCGAAATTGGAGGAGCTAAAGATGGCCAACAATTCATTTACTGGGATGATTCCGGTGGAAATCAAGAAATGTGCATTCCTACGTGTTGTTGATTTTGAAGGCAATCGGTTTGCCGGAGAGGTTCCTTCGTTTTTTGGTTATATGACAGGTCTGAAGGTGCTGTCTCTTGGTGGGAATCTTTTCTCTGGTTCAGTTCCGGAGAATTTCGGCAACCTTTCGGCGCTTGAAACCTTGAGTTTGAGAGGTAATAGCTTGAATGGAACTATGCCTGAGGAGGTCACGGGATTGAAAAATATGTCAACCCTTGACCTCAGTGGAAACAAGTTTACGGGTCAAATTTCTGCAACTATTGGGAACCTGAGTAGATTAATGGTTCTTAATCTGAGTGGCAACAGCTTTTCTGGAAAAATCCCGGCTAGTTTGGGGAATCTCTTCAGGCTAACTACACTTGACTTGAGCAGACAAAATCTTTCTGGCGAATTGCCATTTGAGCTTTCAGGGTTGCCGAATCTGCAGGTTATTGCTTTGCAGGAGAATAAATTATCAGGGGATGTTCCTGAAGGGTTTAGCAGTTTGATGAGTTTGCGATATGTCAACTTGAGCTCTAATGCGTTTTCTGGGCATATTCCTGAAAATTATGGCTTTCTTCGATCACTGGTTGTTCTTTCATTGTCTGACAATCACATTTCAGGAATAATTCCTCCGGAGATTGGAAACTGCTCTGATATTGAGATTCTTGAGCTTGGTTCAAATACTTTGAGGGGTCATATTCCGACTGATCTCACTCGACTCTCCCATTTGAAAGTGCTTGATTTGAGTGGGAACAATTTAACTGGCGATGTGCCTGGGGATATCTCCAAAAGTTCATCCTTAACTGCTCTGTTAGTGGATCACAACCGTCTTTCAGGCACTATACCAGAGTCACTGTCTGACCTATCAAACCTGACAATGTTGGATCTCTCTGCTAACAACTTGAGTGGGGAAATATCTAGTAATATTTCTATGATCCCGAACTTGTTGTACTTCAATGTCTCAGGTAATAACCTGGAAGGTGAGATACCGCCAGCGTTGGGTTCTCGGTTCAACAATCCCTCTGCATTTGCAGATAATCAGAACTTATGTGGGAAGCCATTGAATAGGAAGTGTGAAGATATAGTCGATCGGGACAGGAAGAGGTTGATTGTGTTGATTATTGTAATTGTTGCTGGAGCTTGTTTACTAGCAATGTGTTGCTGCTTCTACATCTACAGCCTTCTGAGGTGGCGTAAAAGGCTTAAAGAAGGGGCGTCTGGGGAGAAAAAAAGAAGTCCTGCTAGGGCGAGTTCTGGAGCAAGTGGAGGCCGAGGCAGCACTGATAATGGTGGACCAAAGCTGGTCATGTTCAATACCAAAATTACGCTTGCTGAAACGATTGAAGCAACTAGGCAGTTTGACGAAGAAAATGTGCTGAGCCGAACAAGGTATGGATTGGTATTTAAGGCTTGCTACAACGATGGAATGGTGCTTTCAATTCGCAGACTCCAAGATGGATCACTGGACGAAAATATGTTCAGGAAAGAGGCAGAATCACTAGGGAAAGTGAAGCACCGGAATTTAACCGTTCTTAGAGGTTATTATGCGGGGTCACCTGACTTGAGGCTCCTAGTCTATGATTACATGCCCAATGGAAACCTAGCAACCCTCCTCCAAGAAGCTTCTCATCAAGATGGCCATGTTCTGAATTGGCCAATGCGCCACCTCATTGCACTTGGGATTGCTCGTGGCCTAGCCTTCCTTCACCAATCCTCGATGGTTCATGGGGACGTGAAACCACAGAGTGTCCTGTTTGATGCTGATTTTGAAGCCCATTTGTCAGACTTTGGGCTCGACCGTCTGACAGTAGCCACCCCCGGCGAACCCTCTACTTCAACCTCAGTTGGCACATTGGGTTACGTATCACCAGAAGCTGTATTAACAGGGGAAGTTACGAAAGAGTCTGATGTGTACAGCTTTGGCATAGTGTTGCTGGAGCTTCTTACAGGAAAGCGACCTGTGATGTTCACACAGGATGAAGATATAGTGAAGTGGGTGAAGAAACAACTACAAAGGGGTCAAATTACGGAGCTGTTGGAGCCAGGATTGCTTGAGCTGGACCCAGAATCATCAGAGTGGGAAGAATTCTTGCTGGGTGTGAAAGTGGGCTTGCTTTGCACAGCGCCGGACCCTCTCGATCGACCAACCATGTCTGACATCGTGTTCATGCTCGAAGGTTGCCGTGTCGGACCTGACATTCCATCCTCCGCCGATCCCACCTCTCAACCTTCTCCGGCATAA 3393 0.4745 MVMPALLFLLVLCAPLLSCAERSGIAIAEIAALTSFKLNLQDPLGALNGWDPSTPAAPCDWRGVACINNRVTELRLPRLQLSGRLTDRLSDLRMLRKLSLRSNSFNGTIPSSLCKCTSLRAVFLQYNSLSGNLPPEIGNLTGLQILNVAQNHLSGRIPGGLPLSLKYVDLSSNSFSGEIPSAIANLSQLQLINLSYNQFSGEIPARFGELQLLEYLWLDHNLLGGTLPSALANCSSLVHLSVEGNVLGGVIPAAIAALPKLQVISLSQNNLTGSIPASIFCNISVYTPSLRIVQLGYNGFTDIVEPEGSTCFSVVQVLDIQHNSIHGRFPLWITNVSTLTMLDVSSNEFSREIPSEIGNLAKLEELKMANNSFTGMIPVEIKKCAFLRVVDFEGNRFAGEVPSFFGYMTGLKVLSLGGNLFSGSVPENFGNLSALETLSLRGNSLNGTMPEEVTGLKNMSTLDLSGNKFTGQISATIGNLSRLMVLNLSGNSFSGKIPASLGNLFRLTTLDLSRQNLSGELPFELSGLPNLQVIALQENKLSGDVPEGFSSLMSLRYVNLSSNAFSGHIPENYGFLRSLVVLSLSDNHISGIIPPEIGNCSDIEILELGSNTLRGHIPTDLTRLSHLKVLDLSGNNLTGDVPGDISKSSSLTALLVDHNRLSGTIPESLSDLSNLTMLDLSANNLSGEISSNISMIPNLLYFNVSGNNLEGEIPPALGSRFNNPSAFADNQNLCGKPLNRKCEDIVDRDRKRLIVLIIVIVAGACLLAMCCCFYIYSLLRWRKRLKEGASGEKKRSPARASSGASGGRGSTDNGGPKLVMFNTKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLQDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGSPDLRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHGDVKPQSVLFDADFEAHLSDFGLDRLTVATPGEPSTSTSVGTLGYVSPEAVLTGEVTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1019 1130 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 913 1116 - -
Dere09g1019 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 800 912 - -
Dere09g1019 1130 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Dere09g1019 1130 Pfam Leucine rich repeat 410 469 IPR001611 GO:0005515
Dere09g1019 1130 Pfam Leucine rich repeat 526 564 IPR001611 GO:0005515
Dere09g1019 1130 Pfam Leucine rich repeat 577 637 IPR001611 GO:0005515
Dere09g1019 1130 Gene3D Ribonuclease Inhibitor 283 456 IPR032675 -
Dere09g1019 1130 SUPERFAMILY L domain-like 81 397 - -
Dere09g1019 1130 Gene3D Phosphorylase Kinase; domain 1 813 912 - -
Dere09g1019 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 620 742 - -
Dere09g1019 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 352 1108 - -
Dere09g1019 1130 Pfam Protein kinase domain 847 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1019 1130 Gene3D Ribonuclease Inhibitor 27 161 IPR032675 -
Dere09g1019 1130 FunFam Inactive leucine-rich repeat receptor-like protein kinase 163 253 - -
Dere09g1019 1130 Pfam Leucine Rich Repeat 483 504 IPR001611 GO:0005515
Dere09g1019 1130 Gene3D Transferase(Phosphotransferase) domain 1 913 1116 - -
Dere09g1019 1130 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Dere09g1019 1130 MobiDBLite consensus disorder prediction 790 817 - -
Dere09g1019 1130 SUPERFAMILY L domain-like 576 733 - -
Dere09g1019 1130 SMART LRR_typ_2 432 456 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 186 209 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 210 234 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 336 360 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 576 600 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 672 703 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 480 504 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 528 551 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 258 282 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 140 164 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 92 116 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 624 648 IPR003591 -
Dere09g1019 1130 SMART LRR_typ_2 408 431 IPR003591 -
Dere09g1019 1130 SMART LRR_sd22_2 624 653 - -
Dere09g1019 1130 SMART LRR_sd22_2 672 695 - -
Dere09g1019 1130 SMART LRR_sd22_2 408 434 - -
Dere09g1019 1130 SMART LRR_sd22_2 258 285 - -
Dere09g1019 1130 SMART LRR_sd22_2 456 482 - -
Dere09g1019 1130 SMART LRR_sd22_2 210 236 - -
Dere09g1019 1130 PRINTS Leucine-rich repeat signature 627 640 - -
Dere09g1019 1130 PRINTS Leucine-rich repeat signature 672 685 - -
Dere09g1019 1130 FunFam Nuclear pore complex protein NUP107 26 162 - -
Dere09g1019 1130 ProSiteProfiles Protein kinase domain profile. 837 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1019 1130 FunFam Leucine-rich receptor-like protein kinase family protein 474 571 - -
Dere09g1019 1130 FunFam Uncharacterized protein 258 473 - -
Dere09g1019 1130 SUPERFAMILY Protein kinase-like (PK-like) 817 1118 IPR011009 -
Dere09g1019 1130 SUPERFAMILY L domain-like 313 594 - -
Dere09g1019 1130 Gene3D Ribonuclease Inhibitor 162 282 IPR032675 -
Dere09g1019 1130 Gene3D Ribonuclease Inhibitor 457 745 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1019 Dere-ChrDere09 13065968 13069360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1019 1 1130 Receptor kinase-like Gene Family AT4G36180 70.979 0.0 1544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Dere09g1019 Pkinase 2.9e-33 CL0016