Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1013 ATGCGAACGCTTTGTGACGCGTGTGAGAGCGCGGCCGCCATCGTATTCTGCGCCGCTGATGAGGCCGCGCTCTGTCGTGCCTGCGACGAGAAGGTTCATATGTGTAATAAGCTGGCTAGTCGGCATATAAGGGTTGGCCTTGCTAGTCCAAGTGATGTGCCACGCTGTGACATTTGTGAAAATGCACCTGCTTTCTTTTATTGCGAGACAGATGGAACGTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGGGGTAAAAGAACACATGGAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGCGATAGACCTGGTCTTGGAGAAAACCCGGCTTCACAGCCTCTGGATGCAGTAGAGAATAAACGAGGCCAAAATTCACTGCTCAAAATAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCAACCCCAGAACATGATGCTGATGGGCATGCCAAGATGGAAACTGAAATGATTGATCTGAACATGAAGCCTCAAAGAATACATGAACAAGGGTCAAATAATCAGCCATGA 546 0.4652 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDRPGLGENPASQPLDAVENKRGQNSLLKIKMGEKQQNHRMPTPEHDADGHAKMETEMIDLNMKPQRIHEQGSNNQP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1013 181 MobiDBLite consensus disorder prediction 138 168 - -
Dere09g1013 181 Gene3D Classic Zinc Finger 2 91 - -
Dere09g1013 181 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere09g1013 181 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 147 - -
Dere09g1013 181 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Dere09g1013 181 CDD Bbox1_BBX-like 56 96 - -
Dere09g1013 181 FunFam B-box zinc finger protein 19 2 92 - -
Dere09g1013 181 MobiDBLite consensus disorder prediction 138 181 - -
Dere09g1013 181 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Dere09g1013 181 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Dere09g1013 181 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Dere09g1013 181 CDD Bbox1_BBX-like 4 47 - -
Dere09g1013 181 SMART bboxneu5 51 96 IPR000315 GO:0008270
Dere09g1013 181 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1013 Dere-ChrDere09 13040534 13042599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1013 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 63.333 1.50e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dere09g1013 zf-B_box 1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1013 09 13040534 13042599 Dere13g0709 13 8931529 8933675 CCT
Dere13g0709 13 8931529 8933675 Dere09g1013 09 13040534 13042599 ECH
Dere09g1013 09 13040534 13042599 Dere09g1013 09 13040534 13042599 ECH