Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1003 ATGGGCGAAATGGGAGAAAAGAGAAAGGAAAGTTGGTATGAAAGGAGAACAGGTAAGCGTGGAGGCAGTGGACCACCTGCGACCTTTTCGCCATACGCGATACATCCCCTTTGTGGCGCTTCTTGGCTTCGATTTGCTATGGATAAACCAGATGAACAGCTACAAGTTTCCCCTATGGACAAGCCGAGTCATCCGGAAGGTGAGAGACCAAGCTTTGACGGTTCCGATACCACTATGGAGCTGATGACCATCGATCCATGCCGGAGTATGAGGGATACGGAAGATTCGCAACTTGTTGGAGTTCCGGTCGCACTTGCCCGCGATGCTGACGTGGCGGAGACGCAGCATGGTTGCTTGCCCAATATGGAGCTCAAGATAGATGTGAAGGTTCCGGACGGCACTTTGGGGAAAAGAAAGCGAGGTCGACCGGCCAGGGGAATCGCCAAAGCACCGCCATTGAAGAAGAATAGGGACGAGGAGGATGTTTGTTTCATTTGTTTCGATGGTGGCAGCCTTGTTCTCTGTGATCGTAGGGGTTGCCCTAAAGCGTATCATCCCGCATGTATTAAGCGAGACGAGGCATTCTTCCGTTCCAAGGCCAAATGGAATTGTGGTTGGCATATATGTAGCGTTTGTCGGAAGGCATCCCATTATATGTGCTATACTTGTACATATTCTTTGTGCAAGGGGTGTACAAAAGATGCTGATTATCTCTGCGTTAGAGGAAATAAAGGTTTGTGTGGAATATGCATGAGGACTATAATGCTCATTGAGAACAGTGCACAGGGAAACAAGGAAATGTGTGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTCTTCAAGGTGTATTGGTTATACTTGAAAGAAAAACTATCTTTGACATTAGATGAGCTCCTTCAAGCTAAAAATCCATGGAAAGGAGCTACTGCCATGGGTTGTAAGGTAGAAATTCCACGTGAACCTCATCTTCATAAAGATGACAAGGGTTCTGGTTCAGAGAACTCCTGTATAGATATAGAATCAAATAACTTAGAACACAACCAGTCTAAGAGACCAGTAAGGCTTCTTAAGAAGGAGGACTGCCCAAATATGAAAACTTCAGGTGGTGACAAAGGTGTGTCTGTGGCTGAATGCACAAGTTGGGCATCAAAGGAGCTTTTAGAGTTTGTTGCACACATGAAAAATGGTGATTCATCTCTTCTATCCCAGCATGATGTTGAGGCTCTTTTGCTGGAGTATATACAGGAAAACAATCTTCGTGATCCTCGACAGAAATGCCAAGTCGTTTGTGATTCAAGGCTAGGAAATTTGTTTGGGAAAGCACGTGTAGGTCACTTTGAAATGTTAAAGCTTCTTGAATCTCACTTTCTTATAAAAGATGATGCCTCTGCCAATGACACAGGAAGGTCAGGAATTATTAATGCAGTTGCTAGTCAAGTGGAGGCTAATGACAGTTGCAATAACCAACCAATGGTTGCTAATGATAAGAGACGTAAAACACGAAAAAAGGCTGAAGTGCTGCATGATAAACCAGATGCATATGCTGCAATAAATGCTCATAACATCAACTTGATTTACTTGCGGCGCCATCAGATGGAGAATCTTATTCAAGATGCTGAGAAGTTTAAAAACAAGGTTGTTGGTTCAATTGTGCGGATAAGAATCTCTAGTAGTGATCAAAAGCAAGAGATGTATAGGCTTGTGCATGTTGTAGGTACAAGCAATGTTGCTGAATCTTACAATATTGGCACAAGAACAACAGACATGGTGCTTGAAATTTCTAATTTAAACAAGAAAGAAGTCATACAAATAAATGAGATTTCAGATCAGAATTTCTCTGAGGACGAATGCAAACGTTTGCGCCAGAGTATAAAATATGGGTTTTCGAAAAGATTGACTGTGGGAGAGATTCTGGACAAAGCATGGACACTTCAAGCTATGAGAGTTAATGATTTGCTGGAAGATGAGATACTGTGGCTTAACCATCTCCGTGATAGAGCAAGTGAAAGGGGACATAGAAAAGAATATCCTTTACTATATATAACTTGCTTCCTTTCCCAATACGCTAAACTGTGGGTACTGGAATATTTGGAGAAGTTACAGTTACTGAACTCACCTGAGGAACGACAGCGAAGGCTGCAAGAAATTCCAGAAGTATACTCTGATCCAAATATGGATTCAATGTTCGACTCTGACGAAGATGCTGAAAAGTCAGATGAAAGGAAACAAGATGACTATACAGAGTCTAAAGATTCTGGGTTTAATAGAAGAGAGAGGGATCCTAGTTCTCCAAGAAGTCAGGGTGGTGTATTTAATGATGCTGGATGCAGAGCACGCAACTTTTTGGTCACTGCCCATGAGCAGATTGGGAATATATGTACTGTAAAGAACCGGACCAGCCCCAATGACGCAGCAAATGGTGATAGCAATAATTTGGGAGTGGCAACATCAGGAACATCTGGTGTTGTATCAGACACTTCATTATTGCCTCTCTCTACTGGGATGGAGCAGCCAATCAATGATTTTGCAACGGAAAGGCTATGGCACTATCGGGATCCATCTGGGAAAGTTCAAGGACCTTTTGCTATGTCTCTGTTGTATAAGTGGAATGCAAGTGGATGTTTCCCTCCTGATCTCAGAATATGGAGGGTAACCGAAATAGAAGATGAGTCTATATTGTTAACTGATGCATTAGGTGGGAAGTGTGGTAAAAATGTGTCATCGCCATGCAACAGCCAACTGCTGTCTTTAGGAGTAAGGGCTGCACTGGGTGATAGAGATGATATTGACTTTCCCAGTTGTACTCCTGTAACCAGTTCCTCAAATTGCATGGATTCCACATCTACTTTTGTTCCTGCAACAAAAACATCACCGAAGAGCCAAGAAATTTGTTTCCTGGACCTGGAGTTGCCTTGTCAAACCTCTAAGCCAACTAATTCTGAACCTACAGGTCAGTCTGCTGAAAACAAACAGTCTGGTTCTTCAAATGCTCCTCTTCAAGATGCTGGTCCTAGCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACACCACTTCCTGAAGTGACCGTTGAATGGAGAAGATGTTCACCAGCTCCACCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAGCCGACTGAAACTGTTGGTGATTGTACTGCTACTCCGTCTTCAATATGTGATCAACTACCACATTCTTCCCCTTCCCATCCATCCTGTAATACATCAACATGGCAGGAAATTATGGATGAACCCAATGGTTTTGGCTCATTTGATAAAACAGTTTCAGATCTGTTGGCAGAAATGGAGGCAATGGGGTCTCTTGGTGGCTTGGAATCGCCCACATCAATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATTGTCTCAGTCCTGCTGAGGGGCTTAGCCCAATGCCTGACGTAGGTAAGGGTGATGCACTGAGCTCCACCGGTGATTTACAATTTCCCTCTCAATCCACAGCATCCGAGGTAGCATTATGCCAACCCGATGTACATTACCATCAAAGAATATCTGGAGGGCATTCCACCAGAAGTTCTGAAGTTGTGGTTGGCATGAAGAATAGTAGTGTTTCGGGTAATCAATGGAAACCAGGTTCAGAAGTTCCATCCTCTGTATCATCCACAGCAACCTGGGACATGGCTACAGATACTACTTGGAGACTTGGCTCAGACAACAGTACACGTGGTTGGGAAGCATCTCAGGTAAATACAAACTTGGGCTGGGGTGGAATGGATAAGGGAAATACAAACATGAGTTGGGGAGGACAGGGGACAGTGCAGGAAAACAGGAACATGAATACATACACTTCCATGGGAACTCCAAGTGTCTTGGGAAGCCAAACGAGATATGGCAGTGACCGATTTTCACCACGTGGTAGGGATATGATTTTTGGTAGGGGTAGACATATGTGGAACAGGCAACCATTTGGTGTTGGAAATGGAGGCTCCCAAAGGCCTCAGCCCAGAGGGCAGCGAATTTGTAAATTTCACGAAAGTGGGTACTGTAAGAAGGGAGCATCATGTGATTACTTACACCCATGA 4098 0.4395 MGEMGEKRKESWYERRTGKRGGSGPPATFSPYAIHPLCGASWLRFAMDKPDEQLQVSPMDKPSHPEGERPSFDGSDTTMELMTIDPCRSMRDTEDSQLVGVPVALARDADVAETQHGCLPNMELKIDVKVPDGTLGKRKRGRPARGIAKAPPLKKNRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCRKASHYMCYTCTYSLCKGCTKDADYLCVRGNKGLCGICMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDELLQAKNPWKGATAMGCKVEIPREPHLHKDDKGSGSENSCIDIESNNLEHNQSKRPVRLLKKEDCPNMKTSGGDKGVSVAECTSWASKELLEFVAHMKNGDSSLLSQHDVEALLLEYIQENNLRDPRQKCQVVCDSRLGNLFGKARVGHFEMLKLLESHFLIKDDASANDTGRSGIINAVASQVEANDSCNNQPMVANDKRRKTRKKAEVLHDKPDAYAAINAHNINLIYLRRHQMENLIQDAEKFKNKVVGSIVRIRISSSDQKQEMYRLVHVVGTSNVAESYNIGTRTTDMVLEISNLNKKEVIQINEISDQNFSEDECKRLRQSIKYGFSKRLTVGEILDKAWTLQAMRVNDLLEDEILWLNHLRDRASERGHRKEYPLLYITCFLSQYAKLWVLEYLEKLQLLNSPEERQRRLQEIPEVYSDPNMDSMFDSDEDAEKSDERKQDDYTESKDSGFNRRERDPSSPRSQGGVFNDAGCRARNFLVTAHEQIGNICTVKNRTSPNDAANGDSNNLGVATSGTSGVVSDTSLLPLSTGMEQPINDFATERLWHYRDPSGKVQGPFAMSLLYKWNASGCFPPDLRIWRVTEIEDESILLTDALGGKCGKNVSSPCNSQLLSLGVRAALGDRDDIDFPSCTPVTSSSNCMDSTSTFVPATKTSPKSQEICFLDLELPCQTSKPTNSEPTGQSAENKQSGSSNAPLQDAGPSWSTASSLVGGGTPLPEVTVEWRRCSPAPPNPSVEEWDSNLVSASSLKPTETVGDCTATPSSICDQLPHSSPSHPSCNTSTWQEIMDEPNGFGSFDKTVSDLLAEMEAMGSLGGLESPTSIMKCGEELTEGSNCLSPAEGLSPMPDVGKGDALSSTGDLQFPSQSTASEVALCQPDVHYHQRISGGHSTRSSEVVVGMKNSSVSGNQWKPGSEVPSSVSSTATWDMATDTTWRLGSDNSTRGWEASQVNTNLGWGGMDKGNTNMSWGGQGTVQENRNMNTYTSMGTPSVLGSQTRYGSDRFSPRGRDMIFGRGRHMWNRQPFGVGNGGSQRPQPRGQRICKFHESGYCKKGASCDYLHP 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1003 1365 ProSiteProfiles GYF domain profile. 847 901 IPR003169 GO:0005515
Dere09g1003 1365 Gene3D - 519 648 IPR036128 GO:0003677
Dere09g1003 1365 Gene3D - 849 903 IPR035445 -
Dere09g1003 1365 MobiDBLite consensus disorder prediction 1289 1309 - -
Dere09g1003 1365 ProSiteProfiles Zinc finger PHD-type profile. 160 226 IPR019787 -
Dere09g1003 1365 SMART gyf_5 848 903 IPR003169 GO:0005515
Dere09g1003 1365 SUPERFAMILY FYVE/PHD zinc finger 157 207 IPR011011 -
Dere09g1003 1365 SUPERFAMILY SWIB/MDM2 domain 382 459 IPR036885 -
Dere09g1003 1365 MobiDBLite consensus disorder prediction 977 1016 - -
Dere09g1003 1365 CDD GYF 847 902 IPR003169 GO:0005515
Dere09g1003 1365 ProSiteProfiles SWIB/MDM2 domain profile. 377 460 IPR003121 -
Dere09g1003 1365 ProSitePatterns Zinc finger PHD-type signature. 163 223 IPR019786 -
Dere09g1003 1365 MobiDBLite consensus disorder prediction 53 78 - -
Dere09g1003 1365 ProSiteProfiles Plus3 domain profile. 518 651 IPR004343 GO:0003677
Dere09g1003 1365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 938 1365 - -
Dere09g1003 1365 Pfam GYF domain 850 890 IPR003169 GO:0005515
Dere09g1003 1365 MobiDBLite consensus disorder prediction 1289 1305 - -
Dere09g1003 1365 MobiDBLite consensus disorder prediction 717 773 - -
Dere09g1003 1365 SUPERFAMILY Plus3-like 519 647 IPR036128 GO:0003677
Dere09g1003 1365 MobiDBLite consensus disorder prediction 732 765 - -
Dere09g1003 1365 MobiDBLite consensus disorder prediction 1 17 - -
Dere09g1003 1365 CDD SWIB-MDM2_like 383 458 - -
Dere09g1003 1365 SMART rtf1 518 628 IPR004343 GO:0003677
Dere09g1003 1365 MobiDBLite consensus disorder prediction 977 1020 - -
Dere09g1003 1365 SUPERFAMILY GYF domain 845 900 IPR035445 -
Dere09g1003 1365 Pfam Plus-3 domain 523 626 IPR004343 GO:0003677
Dere09g1003 1365 ProSiteProfiles Zinc finger C3H1-type profile. 1340 1365 IPR000571 GO:0046872
Dere09g1003 1365 SMART PHD_3 162 208 IPR001965 -
Dere09g1003 1365 MobiDBLite consensus disorder prediction 1208 1227 - -
Dere09g1003 1365 SMART swib_2 376 463 IPR019835 -
Dere09g1003 1365 CDD PHD5_NSD 162 207 - -
Dere09g1003 1365 SUPERFAMILY CCCH zinc finger 1340 1364 IPR036855 GO:0046872
Dere09g1003 1365 Gene3D SWIB/MDM2 domain 372 468 IPR036885 -
Dere09g1003 1365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 250 IPR013083 -
Dere09g1003 1365 Pfam SWIB/MDM2 domain 385 458 IPR003121 -
Dere09g1003 1365 MobiDBLite consensus disorder prediction 1 30 - -
Dere09g1003 1365 FunFam Zinc finger CCCH domain-containing protein 19 152 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1003 Dere-ChrDere09 12948683 12955761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1003 160 240 PHD Transcription Factor Family AT4G14920 34.568 3.28e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dere09g1003 Plus-3 8.3e-23 No_clan