Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1000 ATGAGCGGCGATCACGGCGGTGGGCAAACAAGTAGGCACGTCGGCCCTCATTCAATGCTTTACCAAACTCACCATCCTCTCTTTTTTCAATTTCACCCCTTCGCTCCTTCCTTATCTGACCTTGCAATCTCATCGCCATCTCTTACCCCTGTGTTTTCCCATCTTCCTCTCCTTCAGGCTGAAGCACAAATGGAGTGCGTTGAAGCAGCGTTGAAGACCAGTTTTAGGAAAGACACGGCCGTGAAGCATAACCCTCAGTCTCTTATGGAAGACTGGTCGGCCTTGAATACCCAAAATGTTGCCCCTTCCGACGACTTTTTCGTCGACGAACTTCTTGATTTTTCACATATGGAGGAGCCGTCCGAAGAAGAACAACAACATAAGGATGACTGTGGTTCTGTTTCCCCTCCACCAGAAGACCAAAGCCATGAAATATCTGACCTTGTCTTCCCTTACTCTGTCAAAGACGATGTTGAGTCTGTGCCCTCCAGCGAACTCAGCGTTCCGGCCGACGACTTGGCAAACTTAGAGTGGTTGTCTCATTTTGTCGAAGATTCCTTCTCGGAATATTCCACTGCGTATCCCGCCGGAACTCTAACGGAAAAACCCATGAACCATGTCGAGGAAGGGCCAGAACCCCAGAGCCCTGTTTCAACTCACCCCTGTTTTAAAACTCCGGTTCCGGCCAAGGCCAGAAGCAAGAGAACACGAACCGGAGTTCGGGTTTGGTCACTCGGGTCTTCATCCCTCACCGAGTCATCCTCAAGTTCCACCTCATCTTCCTCCTCCTCCTCTCCCGGTAGCCCCTGGTTAATTTACACCAACGCAGCGCTTGAGCAAGTTTGCTCGGAGACCAAACCACCGGCGAAGAGACCTAAGAAAAAGCCAGCCCCGGACGCCGTGGTGGGGACCGCCGGAGCCGCCCAGACGCCCCGCCGGTGCACCCATTGCGGTGTCCACAAGACGCCACAGTGGCGAACCGGTCCGCTTGGAGCGAAAACGCTTTGCAACGCATGCGGAGTCCGATACAAGTCGGGTCGACTCTTACCCGAATACAGGCCTGCCTGCAGCCCGACATTCTCCAGCGAATTGCACTCGAACCACCACCGTAAAGTGCTGGAGATGCGACGTAAGAAGGAGGGAATGGATGGAGGCGAGTCGGGTATGGTTCCGGGTACGGGTTTGGATTTGGTCTCGACTCCGGCGGTTCCGAGTTTTTGA 1221 0.5381 MSGDHGGGQTSRHVGPHSMLYQTHHPLFFQFHPFAPSLSDLAISSPSLTPVFSHLPLLQAEAQMECVEAALKTSFRKDTAVKHNPQSLMEDWSALNTQNVAPSDDFFVDELLDFSHMEEPSEEEQQHKDDCGSVSPPPEDQSHEISDLVFPYSVKDDVESVPSSELSVPADDLANLEWLSHFVEDSFSEYSTAYPAGTLTEKPMNHVEEGPEPQSPVSTHPCFKTPVPAKARSKRTRTGVRVWSLGSSSLTESSSSSTSSSSSSSPGSPWLIYTNAALEQVCSETKPPAKRPKKKPAPDAVVGTAGAAQTPRRCTHCGVHKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEGMDGGESGMVPGTGLDLVSTPAVPSF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1000 406 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 308 370 - -
Dere09g1000 406 MobiDBLite consensus disorder prediction 118 149 - -
Dere09g1000 406 CDD ZnF_GATA 313 361 IPR000679 GO:0006355|GO:0043565
Dere09g1000 406 MobiDBLite consensus disorder prediction 118 134 - -
Dere09g1000 406 MobiDBLite consensus disorder prediction 284 307 - -
Dere09g1000 406 MobiDBLite consensus disorder prediction 203 267 - -
Dere09g1000 406 Pfam GATA zinc finger 314 348 IPR000679 GO:0006355|GO:0043565
Dere09g1000 406 ProSiteProfiles GATA-type zinc finger domain profile. 308 344 IPR000679 GO:0006355|GO:0043565
Dere09g1000 406 PANTHER GATA TRANSCRIPTION FACTOR 87 381 - -
Dere09g1000 406 ProSitePatterns GATA-type zinc finger domain. 314 339 IPR000679 GO:0006355|GO:0043565
Dere09g1000 406 SMART GATA_3 308 362 IPR000679 GO:0006355|GO:0043565
Dere09g1000 406 Gene3D - 305 381 IPR013088 GO:0006355|GO:0008270
Dere09g1000 406 MobiDBLite consensus disorder prediction 379 406 - -
Dere09g1000 406 MobiDBLite consensus disorder prediction 240 267 - -
Dere09g1000 406 FunFam GATA transcription factor 305 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1000 Dere-ChrDere09 12905330 12907273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1000 68 406 C2C2-Gata Transcription Factor Family AT5G66320 51.558 8.83e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere09g1000 GATA 1.3e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1000 09 12905330 12907273 Dere13g0703 13 8853670 8854770 CCT
Dere13g0703 13 8853670 8854770 Dere09g1000 09 12905330 12907273 ECH
Dere09g1000 09 12905330 12907273 Dere09g1000 09 12905330 12907273 ECH