Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0994 ATGGGAAGAGGAAAGATTGAGATCAAGTTGATCGAGAACCCCACCAACAGGCAGGTCACGTACTCGAAGCGACGCAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTGTGTGATGCTAAGGTCTCCCTCATTATGTTCTCCAGAAACAACAAGATGCACGAATACATCACCCCTGGCTTTACAACGAAGAAGATGATTGATCAGTACCAGAAGGCTCTGGGGAATGTTGATCTGTGGGGTGCCCACTATGAGAGAATGCTCGAGAACTTGAGAAAACTGAAAGAGATAAACAATAAACTCAGAAGACAGATCAGGAATAGGCTAGGTGCAGATTTGGACGATCTGAGCTTCGAGCAACTACGCAGTCTTGAGGAGGACATTATCTCTTCCTCAGCGATGATACGTGAACGAAAGCTCCATGTGATCAAAACTCGGACCGACACCTGCAAGAAAAAGGTTAAAAACTTAGAGCAGGTGAACGGAACTCTGCTGCTAGAAATCAAGGAAAAGTGTATGATCCATCCACAATATCTAATGCACGAGGAAGGAGACGAGGAATCAGCAGCAGCAGTTGCAGTAGCAAATGGTGCCTCCAACCTCTACGCCTTTTGCCAGCAGCACCATACCCATCTCAATCTTCACCACCACGACGATCTTCGCCTTGCTTGA 675 0.4637 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSRNNKMHEYITPGFTTKKMIDQYQKALGNVDLWGAHYERMLENLRKLKEINNKLRRQIRNRLGADLDDLSFEQLRSLEEDIISSSAMIRERKLHVIKTRTDTCKKKVKNLEQVNGTLLLEIKEKCMIHPQYLMHEEGDEESAAAVAVANGASNLYAFCQQHHTHLNLHHHDDLRLA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0994 224 Coils Coil 85 105 - -
Dere09g0994 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere09g0994 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere09g0994 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Dere09g0994 224 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Dere09g0994 224 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g0994 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere09g0994 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere09g0994 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere09g0994 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere09g0994 224 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Dere09g0994 224 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g0994 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Dere09g0994 224 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0994 Dere-ChrDere09 12883672 12885249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0994 1 210 MADS-box Gene Family AT3G54340 48.341 2.07e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere09g0994 K-box 1.9e-17 No_clan