Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0977 ATGGCGGGTTTATTCTCACTAGGCGGCGGCGGAGGAGGAGGAGGTAGGGGAGGAGGAAGCAACCAAGACGACCAACCCCACCACAACAACCCACCCTCGGGAGTTCCTCATCCAGACACCTTATTTTGGTACAAGAATGAAGACGTATCTTGTTACAGAGGCTTCGAGCTTTGGAACCAGCAGCAGCAGCAGGTCATCCCTCAAGCAAGGCCGCTTCTCCCCCAAGATCTTTACTCCCTAGGGGTGGGGCCAAGCAGCAGAAGCTCCGATGATCAGTCGTCGTCGAGATCGGGCATCATGGTGATGCGTTCCTCCGGAGGAAGCGGCGGAGGAATAAGCTGCCAAGACTGTGGGAACCAGGCCAAGAAGGACTGCCCGCACATGCGGTGCAGGACTTGCTGCAAGAGCCGTGGCTACGACTGCCAAACCCATGTCAAGAGCACTTGGGTTCCAGCTTCCAAGCGTCGCGAGCGACAGCAACAGCAGCAGCAACAGCAACAACTTCAACATCGCGGAGACAACAATCCCAAGAGGCTGAGAGATACTAATGATAACCCCAGCACTTCCACTCATTTGCAAATCCCCACTCACTCCTCTTCAGCAGAAGGGTTTGAGCATGGGAATTTTCCACCAGTGATAAGCTCTCCCGCTGAGTTCCGGTGCGTGCGGGTTAGCTCGATGGACGAGGCTGACGATCAATACGCATACCAGACGGCCGTAAACATAGGAGGCCATGTTTTCAGAGGAATTCTCTATGATCAAGGCCCCGATACCAGCTACATATCCACCGGTGACACCTCTTCCGGTGGAGGAGTTCAGCCGCTCAATCTCATTGCCGCTACCGGCGCCTCTGCTCTACCGACAACCGCAACAAGTGGTGGTGCCGCAGCCGTGGCTTCCTCTACGGGGACACTTGTCGATCCTTCTTTGTATGCAGCTCCACTTAGCACTTTCATGGCTGGCAGTGGTACGCAATTCTTCCCTCACCCAAGATCTTGA 999 0.5526 MAGLFSLGGGGGGGGRGGGSNQDDQPHHNNPPSGVPHPDTLFWYKNEDVSCYRGFELWNQQQQQVIPQARPLLPQDLYSLGVGPSSRSSDDQSSSRSGIMVMRSSGGSGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQQQQQQQLQHRGDNNPKRLRDTNDNPSTSTHLQIPTHSSSAEGFEHGNFPPVISSPAEFRCVRVSSMDEADDQYAYQTAVNIGGHVFRGILYDQGPDTSYISTGDTSSGGGVQPLNLIAATGASALPTTATSGGAAAVASSTGTLVDPSLYAAPLSTFMAGSGTQFFPHPRS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0977 332 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Dere09g0977 332 MobiDBLite consensus disorder prediction 181 203 - -
Dere09g0977 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 316 IPR007818 GO:0003700|GO:0006355
Dere09g0977 332 MobiDBLite consensus disorder prediction 81 111 - -
Dere09g0977 332 NCBIfam LRP1 C-terminal domain 209 256 IPR006511 -
Dere09g0977 332 MobiDBLite consensus disorder prediction 1 39 - -
Dere09g0977 332 MobiDBLite consensus disorder prediction 77 111 - -
Dere09g0977 332 MobiDBLite consensus disorder prediction 151 209 - -
Dere09g0977 332 Pfam Domain of unknown function (DUF702) 111 257 - -
Dere09g0977 332 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0977 Dere-ChrDere09 12732761 12734308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0977 1 321 C2H2 Transcription Factor Family AT5G66350 47.647 1.56e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere09g0977 DUF702 4.3e-65 No_clan