Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0967 ATGTTTTCCACTGGAGACATGCCTTCTCCATCCTCAATTTTCTCTGCTTATGCTTCCATGACTGCCTCTGTTATGCTTTTACGTTCCATGGCCAACGAACTCATACCTCACCCTGTTCGAGCCTACCTCCTTAATGCTTTTCGCTACTTCATCAAGCCTTCCTCCCCTGCTCTCACTCTCATCATCGAAGAATCCAGCGGAATTGCTCGCAACCAAGTCTACGACGCCGCAGAGGTTTACCTGTCAGCCAGAGTCAGTCCCGAAAATGAGAGGCTCAAGGTCAGCAAGAGTCCAAAAGAGAATCGCTTGATGATTCGGCTGGAGAAGGGTGAGAAGCTGGTGGATTGGTGTAATGGGGTTGAGCTCAGATGGAGATTTATATGTGCAGAGTCAGAGAAAAACAACCCCAATGATCTTAACAGCTTCGCTATTCGATCAGAAAAGCGATACTTCGAGCTGACTTTCCACAAGAAGCACAAGGAGATGGTGTTAAACTCTTACCTTCCATTCATCCTTGAGAAAGCCAAGACGATGAAAGACGAGGAGAGGGTACTAAAGATGCATACTTTAAACGCATCCTACTGTTACACTGGAGTGAAGTGGGATTCCATCAATCTCGAACACCCATCAACCTTCGAGACTCTGGCTATGGAGCCAGAGCAGAAGAATGCTGTGATCGAGGATCTAAATAGGTTCGTCAACAGGAAGGAGTTTTACAAGAGAGTTGGGAGGGCATGGAAACGAGGGTACTTGTTGTACGGTCCTCCGGGAACTGGAAAATCAAGCTTGATTGCAGCCATGGCTAATTACTTGAAATTTGATATCTATGACCTTCAACTTGCAAATATCGTGAGAGACTCGGACCTCAGAAAGCTGCTTTTGGCCACTGCTAATAGGTCCATTCTAGTGATTGAGGACATTGATTGTAGCGTGGATCTGCCGGAGCGCCGCCATGTAGATGGACGTAAGCAAGCTGACGTACAGTTGACGTTGTCTGGGTTACTGAACTTCATAGATGGGCTATGGTCGAGCTGTGGAGACGAGAGGATCATTATATTCACTACCAACCACAAGGAAAGACTAGACCCTGCTCTGTTACGCCCTGGAAGAATGGACATGCACATTCACATGTCCTATTGCTCCTTCCATGGCTTCAAGCTATTGGCCTCGAATTACTTGGGACTTTCCAGCGATCAGCACCACCATCTGTTCGCAGAGGTAGAAGGGCTCATAGAGAACACCCACATAACCCCTGCTCAAGTGGCAGAGGAGCTCATGAAGAGTGAAGACGCTAATGACGCCCTTGAAGGGTTCGTGAAGCTGCTTAAGCGGAAGAAGATGGAAGGTGATGTGTCCGAGAATGATGGCTCAGAGAAAGCATCGACTCCGCAAAACAAAAGGAGGAGAGTTAATTGCAAGCAGAGAAAAACTGTGGGGATTGCCAAGAGGAATAGTGGGAATACCCAAAGAAGGACGAGAAGGGGAACTAGCTTGTAA 1497 0.4743 MFSTGDMPSPSSIFSAYASMTASVMLLRSMANELIPHPVRAYLLNAFRYFIKPSSPALTLIIEESSGIARNQVYDAAEVYLSARVSPENERLKVSKSPKENRLMIRLEKGEKLVDWCNGVELRWRFICAESEKNNPNDLNSFAIRSEKRYFELTFHKKHKEMVLNSYLPFILEKAKTMKDEERVLKMHTLNASYCYTGVKWDSINLEHPSTFETLAMEPEQKNAVIEDLNRFVNRKEFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLANIVRDSDLRKLLLATANRSILVIEDIDCSVDLPERRHVDGRKQADVQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSFHGFKLLASNYLGLSSDQHHHLFAEVEGLIENTHITPAQVAEELMKSEDANDALEGFVKLLKRKKMEGDVSENDGSEKASTPQNKRRRVNCKQRKTVGIAKRNSGNTQRRTRRGTSL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0967 498 Gene3D - 376 449 - -
Dere09g0967 498 CDD RecA-like_BCS1 225 377 - -
Dere09g0967 498 MobiDBLite consensus disorder prediction 447 498 - -
Dere09g0967 498 Pfam ATPase family associated with various cellular activities (AAA) 251 378 IPR003959 GO:0005524|GO:0016887
Dere09g0967 498 ProSitePatterns AAA-protein family signature. 349 367 IPR003960 GO:0005524|GO:0016887
Dere09g0967 498 SMART AAA_5 246 381 IPR003593 GO:0016887
Dere09g0967 498 PANTHER BCS1 AAA-TYPE ATPASE 15 447 - -
Dere09g0967 498 Gene3D - 199 375 IPR027417 -
Dere09g0967 498 MobiDBLite consensus disorder prediction 447 465 - -
Dere09g0967 498 MobiDBLite consensus disorder prediction 478 498 - -
Dere09g0967 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 430 IPR027417 -
Dere09g0967 498 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0967 Dere-ChrDere09 12632364 12634603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0967 224 381 Calmodulin-binding Proteins AT3G56690 27.711 5.22e-11 63.5