Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0934 ATGAATGATCTGATGACGAAATCGTTCCTAAGTTATGTTGAACTGAAGAAACAGGCGCAGAAGGACCTTGAGGCCGATCTTGACATCGAAGCAGGGCAATTCAACCCCATTGAAGACCAAAACCTCTCTCAGTTCTTTCAAGAAGTTGATGCTATCAAATCTGAAATGGAAGAGATTACCAATCTCTTATTCGATCTTCAACACCTGAATGAAGAAACAAAATCAACCCATAGCGCCAAAGTTCTTCGTGGGCTAAGAGACCGAATGGAGTCAGACATGGTCACCATTCTTCGTAAAGCAAAGATCATCAAGGCAAGGCTAGAATCGCTTGACAAATCCAACATAACAAATCGCAAAATATCAGAATCCTTTAAAGAAGGAACCCCAGTTGATAGAACGAGGATGTCAGTCACAAATGGCTTAAGAGTCAAACTTAGAGACTTAATGAATGAATTTCAGTCCTTGAGAAACAAGATTCTATCTGATCACAAGGATGATCTAAAGAGAAGGTACTATACTGCAACAGGGGAGATCCCAAGCGATGAAATAATGGACAAGATGGTTTCTGGGAGTGTCAAAGTCGAGTTTCTCAAAACAGAGGCTGATATGATGGGTGAGACTCAGGTTAGGCACGAGGCTGTGATGGATATACAGAGAAGTTTGGACAAGCTTCACCAGGTTTTTCTTGACATGGCTATTATTGTTGAGACACAAGGAGAAAAAGTGGATAACATTGAAGATAATGTAGCCAATGCTAGGAACTTCGTTCATGGTGGAACCAATAGTCTTTACTATGCTAATCAGTTGAAGAAGAATAAAAAATGGGCGTGGTGGGTTTGTGCTGTGGGACTGATGATACTGTTAGTGTGCTTAATTGCACTCTTAGCTTCTTGA 894 0.4083 MNDLMTKSFLSYVELKKQAQKDLEADLDIEAGQFNPIEDQNLSQFFQEVDAIKSEMEEITNLLFDLQHLNEETKSTHSAKVLRGLRDRMESDMVTILRKAKIIKARLESLDKSNITNRKISESFKEGTPVDRTRMSVTNGLRVKLRDLMNEFQSLRNKILSDHKDDLKRRYYTATGEIPSDEIMDKMVSGSVKVEFLKTEADMMGETQVRHEAVMDIQRSLDKLHQVFLDMAIIVETQGEKVDNIEDNVANARNFVHGGTNSLYYANQLKKNKKWAWWVCAVGLMILLVCLIALLAS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0934 297 CDD SynN 42 191 IPR006011 GO:0016020
Dere09g0934 297 Gene3D - 38 169 - -
Dere09g0934 297 CDD SNARE_syntaxin1-like 206 263 - -
Dere09g0934 297 PANTHER SYNTAXIN 40 286 IPR045242 -
Dere09g0934 297 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Dere09g0934 297 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Dere09g0934 297 Coils Coil 52 72 - -
Dere09g0934 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Dere09g0934 297 FunFam Syntaxin 132 198 296 - -
Dere09g0934 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Dere09g0934 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Dere09g0934 297 Gene3D - 198 296 - -
Dere09g0934 297 Coils Coil 138 158 - -
Dere09g0934 297 SMART tSNARE_6 199 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0934 Dere-ChrDere09 12330154 12331047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0934 1 297 SNARE and Associated Proteins AT2G18260 61.489 5.65e-134 380