Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0929 ATGAGAGATGGAATGGGCAGCATGTCAAGGCGAAGTTCTGATGGCAAGCAATGGCACCATAGGACAAAGTCACATATTGCTCCTGATGTCCCTCTGCCTCCAGTTGAACCTGTTCAACAGGGACAATGGGCAAATTTACCACCTGAATTGCTTTTGGACATAATCAGGAGGGTGGAAGAGAGTGAGACATCTTGGCCTGCACGTGTTGTCATCCTATTTTGCGCTTCAGTTTGTAGATCATGGAGAGCAATTACAAAGGAAATTGTTAGGACTCCTGAGCAATGTGGACGGCTTACATTTCCTATCTCATTGAAGCAGCCGGGGCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAGCAGAGAAACTTCTACTTATTTGTTGCACTTTGGTCTTGTTCCATCGGAGAATGAGAATGATAAGTTGTTATTAGCTGCTAAAAAGATAAGAAGGGCAACAGGCACAGACTTCGTTATATCTTTGGTTGCAGATGATTTTTGCCGGGCGAGCAAAACATATGTTGGCAAACTGAGATCTAATTTTTTGGGTACCAAGTTCACAATATATGACAGCCAACCTCCACATGAAGCTGGAGTTCAATCCAATGGTCGTTCTAGTCGTAGATTTCACTCTAAGCAAGTGTCTCCAAGAGTTCCAGCTTGTAACTACAATGTTGGCACCATTACCTATGAGCTTAACGTTCTCCGAACCAGAGGACCAAGAAGAATGCATTGCATCATGAACTCTATCACTGTCTCAGCTATTCAGGAAGGCGGCACTGCCCCAACTCCTACATCATTTCCTGACATCTTTGATGAGCGATTTTCTCCCTTGCCAGCACTGAAAGGCAAAGGTAAAGATCCAATTACAGCTTTAAACTCTGCAAGCCTTTCAGAGCCACCAGTATTGAGCCAGGGCTCTTTGGAGCCTTTGGCACTTAAAAACAAGGCTCCTAGATGGCATGAACAGCTGCAGTGCTGGTGTCTAAACTTCAAGGGTCGTGTCACAGTGGCATCTGTTAAGAATTTCCAGCTGGTGGCTGCTGTTGATCCCTCTCATAATGTTTCTGCTGAAGAACAAGAAAAGGTAATCTTGCAATTTGGCAAGATAGGAAAGGATATATTTACCATGGATTACCGTTATCCACTCTCTGCTTTTCAAGCTTTTGCCATCTGCTTGAGCAGCTTTGATACTAAACCAGCATGTGAATGA 1215 0.442 MRDGMGSMSRRSSDGKQWHHRTKSHIAPDVPLPPVEPVQQGQWANLPPELLLDIIRRVEESETSWPARVVILFCASVCRSWRAITKEIVRTPEQCGRLTFPISLKQPGPRDSPIQCFIRRSRETSTYLLHFGLVPSENENDKLLLAAKKIRRATGTDFVISLVADDFCRASKTYVGKLRSNFLGTKFTIYDSQPPHEAGVQSNGRSSRRFHSKQVSPRVPACNYNVGTITYELNVLRTRGPRRMHCIMNSITVSAIQEGGTAPTPTSFPDIFDERFSPLPALKGKGKDPITALNSASLSEPPVLSQGSLEPLALKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAEEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0929 404 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Dere09g0929 404 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Dere09g0929 404 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Dere09g0929 404 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Dere09g0929 404 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Dere09g0929 404 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Dere09g0929 404 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Dere09g0929 404 PANTHER TUBBY-RELATED 19 402 - -
Dere09g0929 404 Pfam F-box domain 43 90 IPR001810 GO:0005515
Dere09g0929 404 SUPERFAMILY Tubby C-terminal domain-like 92 404 IPR025659 -
Dere09g0929 404 SUPERFAMILY F-box domain 38 87 IPR036047 GO:0005515
Dere09g0929 404 CDD F-box_AtTLP-like 43 87 - -
Dere09g0929 404 ProSitePatterns Tub family signature 1. 332 345 IPR018066 -
Dere09g0929 404 Gene3D Tubby Protein; Chain A 101 404 IPR025659 -
Dere09g0929 404 Gene3D - 36 90 - -
Dere09g0929 404 ProSitePatterns Tub family signature 2. 389 404 IPR018066 -
Dere09g0929 404 MobiDBLite consensus disorder prediction 1 26 - -
Dere09g0929 404 Pfam Tub family 104 399 IPR000007 -
Dere09g0929 404 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0929 Dere-ChrDere09 12277321 12279124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0929 1 404 TUB Transcription Factor Family AT2G18280 63.547 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere09g0929 Tub 2.2e-107 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0929 09 12277321 12279124 Dere09g0929 09 12277321 12279124 ECH