Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0928 ATGTCTGGGTTTTCCTTGTTGATTGGGGTTCCTCTGTCCTTTGCTATCTCTTCCTCTTCTATTCTGGCACAGGACATTATTGAGATACTAATGGCTTCTGATGCCGGTGAAGTAGTGCAGACAGTATCAAATTCCTGCTCCTTCAAGGTGCATCATACAATGTGCACAGAACTCAAGAAATTAATTGACAGAGTCTCAAGGATATTACCTGATATAGAGGCAGAACGGCCTCGATGCTCATTGGGAATCCAGACTCTGTGCTCGATAAACAGGGCAATTGATAGGGCCAAACTCCTTCTGCAACATTGCTGTGATTGTAGCAAACTATACCTGGCAGTGACAGGAGACGTGCTACTCTCAAGATGCCAGAAGGCAAATAAATCATTAGAGCAAAGCTTGGACAAAATTCAGAGTATGGTTTCAGTTATATTGGCTGCAGAGATTGCTCAAATAATTGATGATCTGGGATGTGTGAAATTTGTCCTGGACTCATCTGAAGAAGAGGCTGGGAGGGTTGTGAGAGAATTGTTACAGCAAAGTACTTCAGACTCAGATTCAATGGAAGATTCTGAGATCAAAGCTATTCAGATTGCAGCAGCAAGACTTAATATCACATCCCTAAAGACCATCTTATTAGAGAAAAGATCCATTAGGAAGTTTATAGATAAAGTTGGGCCAAATGAACTGACCAAAAGGATGATCTCGAGGTATTTTTTGTATCTATTGAAAAAGTATCAAAACCATATCGTGGGAGATCAAATTGGAAAGGTCTATGCTTGTAGTGAAAAACAAAATGCAACTGGTAACTCCTGTCAAGATCCTTCTCTTAGCCATTATAGTCGGTGTCAAACTCAGACCCATGAATTGCGTAGGGTTATACCACCAGAGGAATACAAGTGCCCAATATCTTCAAAATTGATGTATGATCCCGTTGTCATTGCTTCTGGAGCGAAATATGAAAGGAGGTTTGATGAGGGTCATGATACATGCCCAAAAACTGGGAAGAAATTAACCCATATATCAGTGACTCCAAACACTGGCATGAAGAACTCGATATCAAAGTGGTGCAGAAATAATGGAGTCACCATTCCTGACCCTAATAGGCGAGCAGAAAATTTTAACACATCAGAAACTTCCTCCACTTCCATCAGGAGCTTTGACATTTCTATGAATAATTTGCATTTGCCATTGGATCTTAGCAACGTGTCACTCGGATCAGTAGATAGTTATGGTTCAGATTCCTCTCAGGCTTTAGCTACTCATGATTTAAATTCAATGTTCAAGAAGACTAATGGCACATCCTACAGTCATCAAGCTCATGCACGCAAAGATGATGCAGATTTAATGCTTTTGTCCAAGTTCGCTGACCTTCAATGGGATTCTCAATGCCAGGTCATTGAAAATCTGAAAATTTGTTCAAAATTCAATTTCCAAGCTGATGGTTCTTTGTCATCTGAGAATATCATTGAATCATTCATCAAATTTCTGAACAAGGCATGTGATCTACAAGACATAAAAGCTTTGAGAGCTGGAACTCAGTTGCTCTTAGAATTTGTGAACAAGTGCAGAAGCAGCCTAAGTTATCTAAATGAGGAGATGTTAAGTATCTTGGGCAGTCTCCTGGATTCAGAAGTTATAGGAGAAGCTCTTGCCATAATGGAAGAACTGTCTGAGTGTGAGCATAGTAGAGCTAAAATTGCATCATCCAGTGCACTCACTTCCATATTAAAGAACCTTTCCAAGAGCAGAGAATTCCAACAAGAAGCTATTAGAATAATGTATAATTTGTCCTTCGACGGTGAAGCTTGTTCCCACATGGTATCTCTCCAGTGCATCCCAGAATTGCTGCCATTTTTTAAAGATGGGTCTTCATTGAGATACTGTATATGCATATTGAAAAACCTTTGTGATACAGAAGCGGGTAGGGTTTCTGTTGCCAAAACTGAAGGATGCATATCTGCTATTGTTGAAGTACTTGAGACAGACAGTAATGAGGAACAAGAACATGCACTGGCTGTTCTACTTTCTATATGCTCTCAAAGTTCGGATTATTGTCAGTTGGTTATGGAAAAAGGGGTTATCCCTTCCCTTTTCTTTATCTCCAAAAATGGAAATGACAGAGGAAAGGTGAGTGCATTGGAGTTGCTCCATCTCTTGAGGGATAATGCAAGGGTTGAAAATAAAAAATGCTTGGAATCAACTCCCGGCACTCCTCGAGATCCTACAGATCACTCTCAACGAAAGAAATCACTGAAGATAACTGCATTTCTCAAGAAGCTTTCGGTATTCTGGAAATGCAGTTCACACACATGA 2313 0.4008 MSGFSLLIGVPLSFAISSSSILAQDIIEILMASDAGEVVQTVSNSCSFKVHHTMCTELKKLIDRVSRILPDIEAERPRCSLGIQTLCSINRAIDRAKLLLQHCCDCSKLYLAVTGDVLLSRCQKANKSLEQSLDKIQSMVSVILAAEIAQIIDDLGCVKFVLDSSEEEAGRVVRELLQQSTSDSDSMEDSEIKAIQIAAARLNITSLKTILLEKRSIRKFIDKVGPNELTKRMISRYFLYLLKKYQNHIVGDQIGKVYACSEKQNATGNSCQDPSLSHYSRCQTQTHELRRVIPPEEYKCPISSKLMYDPVVIASGAKYERRFDEGHDTCPKTGKKLTHISVTPNTGMKNSISKWCRNNGVTIPDPNRRAENFNTSETSSTSIRSFDISMNNLHLPLDLSNVSLGSVDSYGSDSSQALATHDLNSMFKKTNGTSYSHQAHARKDDADLMLLSKFADLQWDSQCQVIENLKICSKFNFQADGSLSSENIIESFIKFLNKACDLQDIKALRAGTQLLLEFVNKCRSSLSYLNEEMLSILGSLLDSEVIGEALAIMEELSECEHSRAKIASSSALTSILKNLSKSREFQQEAIRIMYNLSFDGEACSHMVSLQCIPELLPFFKDGSSLRYCICILKNLCDTEAGRVSVAKTEGCISAIVEVLETDSNEEQEHALAVLLSICSQSSDYCQLVMEKGVIPSLFFISKNGNDRGKVSALELLHLLRDNARVENKKCLESTPGTPRDPTDHSQRKKSLKITAFLKKLSVFWKCSSHT 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0928 770 Coils Coil 119 139 - -
Dere09g0928 770 MobiDBLite consensus disorder prediction 729 748 - -
Dere09g0928 770 SUPERFAMILY RING/U-box 285 365 - -
Dere09g0928 770 Pfam U-box domain 295 359 IPR003613 GO:0004842|GO:0016567
Dere09g0928 770 SMART Ubox_2 297 355 IPR003613 GO:0004842|GO:0016567
Dere09g0928 770 CDD RING-Ubox_PUB 295 339 IPR045210 -
Dere09g0928 770 Gene3D - 481 734 IPR011989 -
Dere09g0928 770 ProSiteProfiles U-box domain profile. 293 362 IPR003613 GO:0004842|GO:0016567
Dere09g0928 770 PANTHER U BOX DOMAIN-CONTAINING 53 724 - -
Dere09g0928 770 SUPERFAMILY ARM repeat 458 719 IPR016024 -
Dere09g0928 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0928 Dere-ChrDere09 12271338 12276433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0928 47 763 U-box Gene Family AT4G36550 35.724 1.50e-123 385