Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0926 ATGCCACTGTCAGGATTCAAAGGTAGAGTTTTAAATCAGATGGCATCATCTTGGACGCCAAGGCAAAACAAACTATTTGAACAAGCCCTGGCTTTATATGATACGGAAACCCCTGACAGGTGGCAGAATATTGCCAGAGTGGTGGGAAAATCTGTAGAGGAGGTTAAAAGGCACTATGAAATCCTCAAAGAAGATGTTGAACGCATTGAGAATGGCCAAGTCCCATTTCCTCATTACAGGACGCACAATAACAACACCTAA 261 0.4291 MPLSGFKGRVLNQMASSWTPRQNKLFEQALALYDTETPDRWQNIARVVGKSVEEVKRHYEILKEDVERIENGQVPFPHYRTHNNNT 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0926 86 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
Dere09g0926 86 ProSiteProfiles SANT domain profile. 13 67 IPR017884 -
Dere09g0926 86 CDD SANT 17 63 IPR001005 -
Dere09g0926 86 SMART sant 14 65 IPR001005 -
Dere09g0926 86 Gene3D - 12 76 - -
Dere09g0926 86 FunFam Transcription factor SRM1 11 76 - -
Dere09g0926 86 Coils Coil 52 72 - -
Dere09g0926 86 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 13 84 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0926 Dere-ChrDere09 12259476 12260222 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere09g0926 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0643 13 8054240 8054452 Dere09g0926 09 12259476 12260222 ECH
Dere09g0926 09 12259476 12260222 Dere09g0926 09 12259476 12260222 ECH
Dere06g0209 06 2917450 2918395 Dere09g0926 09 12259476 12260222 ECH
Dere09g0926 09 12259476 12260222 Dere13g0643 13 8054240 8054452 ECH