Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0919 ATGTCAAATAAAGAAAGCAGGGTTAAGGGTGGAGACAAGGAAAGAGTCAAATATTTGATTGAAGTGCGAGGTTTAGATAAGGAAATGGAGATGCCATTACCAACCACTTCAGGTTATAATTCCGTCAATAGGGATTCGTCTTCTTCTCCAACTCTAGCTTCAAACGCAGGGGAAAGTAGTGATCAACCTCCTCAAACTTCAGACCACCATAATCTTCGTCATCATCCTCCTCCTCATCCTCTCCAATCTAATCCACTCCAGCAATTGCAGAGACCCACAAGGGATCCAGATCCACCAGGAATAACAATCACGCCAGTTGCTAGCGGATCAAACCCAAGACCAGCAACAGTAACAACAATCAGGTACAGAGAATGCTTGAAGAATCACGCGGCGAGCATGGGAGGACACGTGGTGGATGGATGCGGCGAGTTCATGCCAAGCGGAGAAGAAGGCACTCCACGATCCTTGAGATGTGCTGCTTGTGACTGTCACCGTAATTTTCATCGCAAAGAGACCGAAGGTGAACCACAAGTTAATGTTCCCAATTACTACACCTACCCTCCCAACAAAAGCAATAACGCTCAAAATAGGATTCTTTCTCCTCAGTTTCCCACACCTCCTCCTTCTCTACATCATCATCCACAGAATAGATTTTCAGGAGGGTTGTTTCCGCCGATGATGATGGCCTTCGGCGGCGGCGGGGCGGCGGAGTCATCGAGCGAAGATCTGAATATGTTTCAGAGTAATAATACGGGAGGGCAAGGGTCAGTGCAGCCTGTATTGTCATCAAAGAAGAGGTTTAGGACTAAGTTTAACCAGCAGCAAAAGGATAGGATGATGGAGTTCGCTGAGAAGTTGGGTTGGAGGATCCAGAAACATGACGAGCAAGAAGTACAGCAGTTTTGTAATCAAGTGGGTGTGAAAAGGCAGGTTTTCAAGGTTTGGATGCACAATAACAAGCAAGCTATGAAGAAGAAGCAAATGTAA 987 0.462 MSNKESRVKGGDKERVKYLIEVRGLDKEMEMPLPTTSGYNSVNRDSSSSPTLASNAGESSDQPPQTSDHHNLRHHPPPHPLQSNPLQQLQRPTRDPDPPGITITPVASGSNPRPATVTTIRYRECLKNHAASMGGHVVDGCGEFMPSGEEGTPRSLRCAACDCHRNFHRKETEGEPQVNVPNYYTYPPNKSNNAQNRILSPQFPTPPPSLHHHPQNRFSGGLFPPMMMAFGGGGAAESSSEDLNMFQSNNTGGQGSVQPVLSSKKRFRTKFNQQQKDRMMEFAEKLGWRIQKHDEQEVQQFCNQVGVKRQVFKVWMHNNKQAMKKKQM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0919 328 MobiDBLite consensus disorder prediction 22 115 - -
Dere09g0919 328 SUPERFAMILY Homeodomain-like 253 325 IPR009057 -
Dere09g0919 328 FunFam Zinc-finger homeodomain protein 2 252 325 - -
Dere09g0919 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 122 171 IPR006456 -
Dere09g0919 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 121 171 IPR006456 -
Dere09g0919 328 MobiDBLite consensus disorder prediction 34 66 - -
Dere09g0919 328 Pfam ZF-HD protein dimerisation region 120 172 IPR006456 -
Dere09g0919 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 93 321 - -
Dere09g0919 328 Gene3D - 249 325 - -
Dere09g0919 328 NCBIfam homeobox domain, ZF-HD class 264 321 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0919 Dere-ChrDere09 12132606 12135000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0919 110 328 ZF-HD Transcription Factor Family AT2G18350 52.466 3.14e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere09g0919 ZF-HD_dimer 3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0919 09 12132606 12135000 Dere13g0641 13 8038240 8039022 CCT
Dere09g0919 09 12132606 12135000 Dere09g0919 09 12132606 12135000 ECH
Dere13g0641 13 8038240 8039022 Dere09g0919 09 12132606 12135000 ECH