Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0911 ATGATGCATCGATGCAGTAGCTCCCAGGGGCACGTGATGGGACCGTGCACATGTGGTATGTTTCACAGCCAAAGCAATTCCTTCTCTATGCTATTCTCGATGCCCAACCACAAACCCTATGACGAATCCGACATGTATTCCTTCACGCCCTCTCCTTCCTCCTCCGTTGACTGCACCCTCTCTCTAGGCACCCCTTCCACTCGTTTAACAGAAGACGAAGAAAAACGCAACCGCCATGAACATCGCTCTGTTTCAAACTTCTGCTGGGATTTATTACAATCCAAACACACCCCTCAATCCCACATCAAGTCTACCCGTGGCACCAATGGCAGTAACTCTTCCAGTGATCCCCTCCTCGCCCGTCGCTGTGCAAACTGCGACACCACTTCCACTCCTCTTTGGAGAAACGGCCCTAGAGGTCCCAAGTCACTATGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAAAGAAGGGCGAGCGCTGTGGCCGCCACGACTGCGGTGAACTCAGGCGGCGTAATGGAGTCGGCGCAGATGTACAGCCACCACAACAGTTCATGGTACGCGCACTCGCAGAGCCAGAAAATACAGTGCCTCTCGCCGGCGATGGGCAACGAGTTTCGCTTCATGGACGACACCGATCGAGACGCCGAAAGCGGCATTCCGTTTCTCTCTTGGAGACTCAATGTAACGGACAGACCAAGCCTCGTCCACGACTTTACGAGATGA 729 0.5336 MMHRCSSSQGHVMGPCTCGMFHSQSNSFSMLFSMPNHKPYDESDMYSFTPSPSSSVDCTLSLGTPSTRLTEDEEKRNRHEHRSVSNFCWDLLQSKHTPQSHIKSTRGTNGSNSSSDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAVAATTAVNSGGVMESAQMYSHHNSSWYAHSQSQKIQCLSPAMGNEFRFMDDTDRDAESGIPFLSWRLNVTDRPSLVHDFTR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0911 242 ProSitePatterns GATA-type zinc finger domain. 123 148 IPR000679 GO:0006355|GO:0043565
Dere09g0911 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 158 - -
Dere09g0911 242 PANTHER GATA TRANSCRIPTION FACTOR 18 10 242 IPR044272 GO:0003700|GO:0009908
Dere09g0911 242 CDD ZnF_GATA 122 154 IPR000679 GO:0006355|GO:0043565
Dere09g0911 242 SMART GATA_3 117 169 IPR000679 GO:0006355|GO:0043565
Dere09g0911 242 MobiDBLite consensus disorder prediction 57 77 - -
Dere09g0911 242 Gene3D - 119 195 IPR013088 GO:0006355|GO:0008270
Dere09g0911 242 ProSiteProfiles GATA-type zinc finger domain profile. 117 153 IPR000679 GO:0006355|GO:0043565
Dere09g0911 242 Pfam GATA zinc finger 123 157 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0911 Dere-ChrDere09 12020316 12021264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0911 17 242 C2C2-Gata Transcription Factor Family AT3G50870 45.993 6.04e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere09g0911 GATA 5.8e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0911 09 12020316 12021264 Dere13g0638 13 8000981 8002678 CCT
Dere09g0911 09 12020316 12021264 Dere09g0911 09 12020316 12021264 ECH