Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0888 ATGTATGATTTGATCATATCTAATGATATAGTGTCTCAAGATGCAACATTTAAGCTTCAAATTCCAAAACCTCATATTCTCAAACATGATTCTAACCTTCACAAGGTTGAACCACCTATTCCAGAGTTTCTTGTACCTGATCTTCCCTTGTTTGAACTTGTCAGTCTAGTACTTGAACTTGCAGTTATGCCTAAGTCAATTCCTCCTCTTAAGCGCTTGGGGCTCGGAATGGGGAAAGAGAACGGAGTGAAGAGCAATAGATACGCAGAGTCACCGATTTTGGCGCTAAAAGATGAGGAAGTGAAAGAGGAAGTAGATGTTAAGAATGAAGAGTCTTCATTTATATCAAGGTCAATGGCAGAAGAGGAAAACAACCTTTTGAAAGCTCGGCTTGAGGAAGAGGTGGAGGAATCCAAAAATGAGCCACAGGAGGCACCCAACTTGAATGAAACTCAGTTTAGCAAGTTGGATGAGCTTTTAACACAAACTCAACTGTACTCAGAATTTCTACTGGAGAAAATGGATGACATCACTCTTAATGGTGGTGAACAAGAGGATGAGTCAGTTAAGAAAAAGAGGGGCCGTGGCTCAAAAAGGAAAGGAAATGCAGAATACAATAATAAGAAAGCCAAAAGGGCAGTTGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGAGAACTGAAGATATGAACCTGAGTGAAGAGGAAAGAATTGAGAAGGAGCAGAAAGAACTTATACCTCTGTTGACAGGTGGAAAGCTGAAGCAATATCAAATGAAAGGTGTCAAGTGGCTGATCTCTTTGTGGCAAAATGGATTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACGATCCAAACTATTGGCTTTCTTGCACATCTAAAAGGGAAAGGTTTAGATGGGCCATACTTGATAATTGCCCCTCTATCAACCCTCTCAAATTGGATGAATGAAATTTCTCGGTTTGCTCCAACCCTCACTTCTATTATTTACCATGGTGACAAGAAGGAAAGGGATGACATCCGAGGGAAATATATGCCCAGAACAGTTGGCCCCAAATTTCCCATTGTCATCACTTCCTATGAAATTGCATTAAATGATTCGAAGAAATATCTGAGATTCTACCAGTGGAAATATGTTGTAATTGATGAGGGACACAGGCTCAAAAACTTTAAATGCAAATTAGTGCAGATGTTGAAATTCATACCGGTTGAAAATAAGCTTCTGTTAACTGGGACACCTCTTCAGAATAACTTGGCTGAACTATGGTCATTGTTAAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATTTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAATTAGAAGAGAAAAGAAGAACCCAGGCATGCATTAATAAGATAGCTTATGTGGTAGCTAAGCTCCATGCCATTCTGCGCCCCTTTCTTCTTCGGAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATAATCATATATGCCTGTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAGTTAATAAGACATTGGAGAACTATTTAAGTGAAAAATCTGCAACTGGACATGGTTCAAAAAATCTTAATAATTTGGTTATTCAACTTAGGAAGAACTGTAATCATCCTGACCTCTTAGAGTCAGCCTTTGATGGTTCATATATTTATCCACCTGTCAATGAGATTGTTCAACAATGTGGGAAATTCCGTTTACTGGACCGTTTGTTGGCTCGTTTATTGGTTCAGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACTAAAATTTTGGATATTATGGATTACTATTTTAGCGAAAAGGGTCTAGAAGTTTGCAGAATTGATGGCAGTGTCAAACTAGATGAAAGGAAAAGACAGATTAAGGACTTCAATGATGAGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGTGGATTGGGAATTAACCTTACTGCAGCTGACACTTGCATTCTTTACGACAGTGATTGGAATCCTCAGATTGATCTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAGCCTGTTCATGTATACAGGCTTGCAACAGCTCAATCTGTGGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGGAAAGGGCATTTTCATCAAGAACGACTAAAGTCCAACAGTCTAGAGTTCACAGAGGAAGAGGAATTGTTGGCATTGCTTCAAGAGGAAGAATCAGCTGAAGACAAAGCAATCCAAACAGATATTAGTGATGAAGACCTAGAGAAGCTTTTGGATCGCAGTGATCTTATTGTTGATAACTCAAATTGTGCAAGCAGTAATCTTCCTCTTAGAGGGCCTGGATGGGAGGTGGTGATTCCAACTGCAACTGGGAACATGCTTTCTACTCTTAACAGCTAA 2478 0.3959 MYDLIISNDIVSQDATFKLQIPKPHILKHDSNLHKVEPPIPEFLVPDLPLFELVSLVLELAVMPKSIPPLKRLGLGMGKENGVKSNRYAESPILALKDEEVKEEVDVKNEESSFISRSMAEEENNLLKARLEEEVEESKNEPQEAPNLNETQFSKLDELLTQTQLYSEFLLEKMDDITLNGGEQEDESVKKKRGRGSKRKGNAEYNNKKAKRAVAAMLTRSKESERTEDMNLSEEERIEKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWMNEISRFAPTLTSIIYHGDKKERDDIRGKYMPRTVGPKFPIVITSYEIALNDSKKYLRFYQWKYVVIDEGHRLKNFKCKLVQMLKFIPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEKRRTQACINKIAYVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYACMTEHQKNFQEHLVNKTLENYLSEKSATGHGSKNLNNLVIQLRKNCNHPDLLESAFDGSYIYPPVNEIVQQCGKFRLLDRLLARLLVQKHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGSVKLDERKRQIKDFNDENSNYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIGKGHFHQERLKSNSLEFTEEEELLALLQEEESAEDKAIQTDISDEDLEKLLDRSDLIVDNSNCASSNLPLRGPGWEVVIPTATGNMLSTLNS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0888 825 Pfam SNF2-related domain 257 562 IPR000330 GO:0005524|GO:0140658
Dere09g0888 825 MobiDBLite consensus disorder prediction 131 153 - -
Dere09g0888 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 784 IPR027417 -
Dere09g0888 825 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 588 744 IPR001650 -
Dere09g0888 825 SMART helicmild6 614 698 IPR001650 -
Dere09g0888 825 PANTHER SNF2/RAD54 HELICASE FAMILY 101 770 - -
Dere09g0888 825 MobiDBLite consensus disorder prediction 182 206 - -
Dere09g0888 825 SMART ultradead3 250 445 IPR014001 -
Dere09g0888 825 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 266 434 IPR014001 -
Dere09g0888 825 Coils Coil 224 244 - -
Dere09g0888 825 Coils Coil 117 141 - -
Dere09g0888 825 Gene3D - 498 801 IPR027417 -
Dere09g0888 825 FunFam ATP-dependent DNA helicase DDM1 248 501 - -
Dere09g0888 825 Pfam Helicase conserved C-terminal domain 588 698 IPR001650 -
Dere09g0888 825 Gene3D - 219 480 IPR038718 -
Dere09g0888 825 FunFam Chromatin complex subunit A 106 502 729 - -
Dere09g0888 825 CDD SF2_C_SNF 574 708 - -
Dere09g0888 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 492 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0888 Dere-ChrDere09 11763502 11771765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0888 240 719 RAD5 or RAD16-like Gene Family AT3G16600 25.510 1.75e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere09g0888 SNF2_N 6.4e-63 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0888 09 11763502 11771765 Dere09g0888 09 11763502 11771765 ECH