Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0866 ATGCCGGTTGATTTTGATAATTCTTCCACAGCTTCCGGGGAAGCTAGCGTCTCTTCCTCTGGCAATCAGACAGTGCCTCCAAAGTCCACTGCTAAGAAAAAGCGAAGTCTTCCCGGAATGCCAGATCCAGACGCAGAGGTGATTGCTCTGTCTCCGAAGGCCCTGTTAGCCACAAATCGATTCGTATGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTCCAACTTCATCGACGGGGTCATAATCTGCCATGGAAGCTCAGGCAGAGGTCCAGCAAGGAGGTGAGGAAAAGAGTCTATGTCTGTCCCGAGCCAACCTGTGTTCATCATGATCCTTCCAGAGCTTTGGGTGATCTAACTGGAATAAAGAAGCATTTCTGTAGAAAACACGGTGAGAAGAAGTGGAAATGCGACAAATGTTCGAAGAAATATGCAGTTCAGTCAGATTGGAAGGCTCACTCTAAGATTTGTGGTACCAGAGAGTACAGATGCGATTGTGGAACTTTGTTTTCGAGGAGGGATAGCTTTATCACCCACAGGGCATTTTGTGATGCGTTGGCAGAGGAGAGTGCAAGAAATCAGACTCAGCCTCAGACTCAAACCCAGACGCAGGCTCCTGAGAAACCTAATTCAGAATCAGACCCAAAAACTATAACAGGCGATTCACCGCCTAAGGAGCCAGCGCCTGCGCCGCCGCCACCGCCGCCGCCACCACCACCACCATCTACAGCCCCGCCTGCTCCTCCTCAGTCAAATAGCGTCATACCACCTACCTTGCAGACCAAAAATCCAGAGTTGCCAGAAAACCCCCCACAAATCATAGAGGAACCACAGGCCACTACTGCTCTAAATGGGAGCTGTAGCAGCAGTACAAGCTCAACCGGCAATGGCAGTACTAGCAGTAGTGTATTTGCAAGCTTGTTTGCTTCCTCAACTGCATCCGGGAACCTGCAATCTCCTCAACCTCAAGCACCTGCATTTACTGACCTAATAAGGGCAATGGCACGTCCTGATCGTCCTGCAGAGCTCACAGGGCCTTCATCTTCGGAGCCTATTTCTCTCTGCCTCTCCACTAACAATGGGTCATCAATTTTTGGAACGGGAGGGCAAGAACGTCGCCAGTATGCCCCTTCGCCACAGCCAGCAATGTCTGCCACAGCACTACTGCAGAAAGCTGCTCAAATGGGTGCAGCAGCTACAAATGCATCATTGCTTCGTGGGTTTGGTATAGTGCCATCTTCCTCATCTTCATTAAGCCAGCAAGATAATGTGCCTTGGGGTCAGGGGCAAGTAGAACCAGAGAATGCCTCAGTTCAAGCAGGGCTTGGGCTTGGGCTCCCTTGTGATGGTGGCTCTGGACTGAAGGAATTAATGATGGGGACACCTTCCATGTTTGGTCCCAAACACACAACTCTTGACTTTCTGGGATTGGGGATGGCTGCTGGTGGTGGCACCCCTAGTGGAGGCTTGTCAGCACTTATCACATCTATTGGCGGTGGTCTGGATGTTACTGCTGCAGCAACACCTTTTGGTAGTGCAGAGTTTTCAGGCAAAGATATTGGGAGGAGCTCGTGA 1581 0.5041 MPVDFDNSSTASGEASVSSSGNQTVPPKSTAKKKRSLPGMPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARNQTQPQTQTQTQAPEKPNSESDPKTITGDSPPKEPAPAPPPPPPPPPPPSTAPPAPPQSNSVIPPTLQTKNPELPENPPQIIEEPQATTALNGSCSSSTSSTGNGSTSSSVFASLFASSTASGNLQSPQPQAPAFTDLIRAMARPDRPAELTGPSSSEPISLCLSTNNGSSIFGTGGQERRQYAPSPQPAMSATALLQKAAQMGAAATNASLLRGFGIVPSSSSSLSQQDNVPWGQGQVEPENASVQAGLGLGLPCDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGGTPSGGLSALITSIGGGLDVTAAATPFGSAEFSGKDIGRSS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0866 526 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Dere09g0866 526 MobiDBLite consensus disorder prediction 191 220 - -
Dere09g0866 526 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Dere09g0866 526 FunFam protein indeterminate-domain 12-like 40 108 - -
Dere09g0866 526 SMART c2h2final6 61 83 IPR013087 -
Dere09g0866 526 SMART c2h2final6 102 132 IPR013087 -
Dere09g0866 526 SMART c2h2final6 137 157 IPR013087 -
Dere09g0866 526 MobiDBLite consensus disorder prediction 224 255 - -
Dere09g0866 526 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Dere09g0866 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 484 IPR031140 -
Dere09g0866 526 MobiDBLite consensus disorder prediction 284 303 - -
Dere09g0866 526 Gene3D Classic Zinc Finger 115 196 - -
Dere09g0866 526 MobiDBLite consensus disorder prediction 1 45 - -
Dere09g0866 526 Gene3D Classic Zinc Finger 44 107 - -
Dere09g0866 526 MobiDBLite consensus disorder prediction 191 274 - -
Dere09g0866 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Dere09g0866 526 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0866 Dere-ChrDere09 11567543 11569831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0866 1 526 IDZ Gene Family AT5G66730 59.074 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere09g0866 None None None