Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0860 ATGAGGGTGACAGCTACCACCATGAATCCTCATCCCATTGAAGATCACATGGTGCTGATCTCTCAGCTATACCCTGGTGCTTACTCTCAAATAATTCCTCAACAAGGTTTCCATCTTTGGGAGACAAAGCCGAGACGACGTCGTAAGAAGAACAAAGGAGGAGAGAACGGAGGTGGGGGAGTGAAGAAGAGGAAGCTCAGTGCTGAGCAAGTGAATCTTCTAGAGCTAAACTTTGGGAACGAACACAAATTGGAGTCTGAACGGAAGGACCAGCTGGCATCGGAGCTGGGCTTGGATCCACGTCAAGTGGCGGTGTGGTTCCAAAATCGAAGGGCGCGTTGGAAGAACAAGAAGTTGGAAGAAGAGTACTCCAACCTTAAGAAAGTCCACGAGTCCACCATTCTCGAGAAATGCCGCCTCGAAACCGAGGTACTGAACCTGAAGGAGCAGCTTTCAGAAGCAGAGAAAGAGATTCAACGGCTTCTGGAGCGAGTGGATAGAGTGTCAAGCAGCAACAGCCCCAGTTCATCACAGTCAATGGAAGCTGTGGACCCTCCATTTCTGGGAGAGTTTGGAGTGGAGGCTTATGATGATGATGTGTTTTACATGCCACAGACCCATTACATCAATGGCATGGATGAATGGATATACATGTGA 657 0.4871 MRVTATTMNPHPIEDHMVLISQLYPGAYSQIIPQQGFHLWETKPRRRRKKNKGGENGGGGVKKRKLSAEQVNLLELNFGNEHKLESERKDQLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKVHESTILEKCRLETEVLNLKEQLSEAEKEIQRLLERVDRVSSSNSPSSSQSMEAVDPPFLGEFGVEAYDDDVFYMPQTHYINGMDEWIYM 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0860 218 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Dere09g0860 218 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Dere09g0860 218 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Dere09g0860 218 SMART HOX_1 60 121 IPR001356 GO:0003677
Dere09g0860 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 178 IPR045224 GO:0003700
Dere09g0860 218 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Dere09g0860 218 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Dere09g0860 218 MobiDBLite consensus disorder prediction 39 64 - -
Dere09g0860 218 Coils Coil 109 171 - -
Dere09g0860 218 CDD homeodomain 64 118 IPR001356 GO:0003677
Dere09g0860 218 Gene3D - 56 125 - -
Dere09g0860 218 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Dere09g0860 218 SUPERFAMILY Homeodomain-like 61 125 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0860 Dere-ChrDere09 11473153 11474805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0860 8 216 Homeobox Transcription Factor Family AT2G18550 54.709 1.21e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Dere09g0860 Homeodomain 1.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0860 09 11473153 11474805 Dere13g0616 13 7744311 7745927 CCT
Dere09g0860 09 11473153 11474805 Dere09g0860 09 11473153 11474805 ECH