Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0837 ATGGCTTCTCAGAGCTTCACTTCTATATCATGCCCCTCTATTCTGGCCATTACGATCCTCACCCTTTTGGGTCCAACCCTCACTTCTGCCAAGCAAATCAAGATGACTGGGTTGAACATGAATGTGATTGATCAATGCTGGAGACGGAACCCTGAATGGAGGAGACACCGCCCTCAGCTTGCCGCCTGCTCGGTGGGCTACGCGGGGAAGATGACCAACAACATTGGAAAAGACCTCATCCACTACAAAGTCACTGATCCTAGTGACGACCCAGTCAACCCAAAACTTGGCACCTTGAGATATGGAGCTTCCATGATTCAAGGCAAAGTCTGGATCACTTTCCAAAGAGACATGCTCATTAGGCTACACAGTCCCCTTCTCATCAGCAGCTTCACCGCCATTGATGGCCGAGGCGTCGACGTTCACATTGCTCATAATGCATGCTTGATGATCTTCAAGGCGAGCAACATTATAATACACGGAATTCGGATCCACCACTGTAAGCCTCAGGCTGCTGGGATGGTGATGGGTCCAGGGGGGAAGGTAATTCAAGTGGGTCAGGTTGATGGGGACGCAATCAGATTGGTTACGGCCTCCAAGGTTTGGATTGACCATAATACGCTGTACGATTGTCAAGACGGCCTTCTCGATGTCACAAGGGGTTCCACCGACGTCACCGTCTCCAACAATTGGTTCAGAGACCAAAACAAGGTCATGCTTCTTGGCCACGATGATGGCTACGCCAGAGACAAGAACATGAAGGTCACCGTGGTGTACAACCATTTTGGACCCAACTGCAACCAACGCATGCCCAGAATTCGTCATGGGTATGCACATGTAGCCAACAATCTCTACCAAGGGTGGGTGCAATACGCCATTGGTGGAAGCATGGAACCTAGCCTCAAAAGCGAAGCCAACCTCTTTATAGCTCCAACATCTGGAAGTAAAGAGGTGACATGGAGAAAAGAGAGCAATGGAAATGGAGGAGCATGGGAATTTCATTCGGTGAGGGATGTGTTTGAAAACGGAGCTAGCTTCACGGAAACCAAAGGAGGACGAGTGCCAAAGCCCAATTATAACGCGGAACAGAGTTTTGGAGTTGCAGATGCCAAATCTGTGAGGTCATTGACAAGATCATCAGGTGCCTTACGTTGCACCAAAACCTCTAGATGCTGA 1176 0.494 MASQSFTSISCPSILAITILTLLGPTLTSAKQIKMTGLNMNVIDQCWRRNPEWRRHRPQLAACSVGYAGKMTNNIGKDLIHYKVTDPSDDPVNPKLGTLRYGASMIQGKVWITFQRDMLIRLHSPLLISSFTAIDGRGVDVHIAHNACLMIFKASNIIIHGIRIHHCKPQAAGMVMGPGGKVIQVGQVDGDAIRLVTASKVWIDHNTLYDCQDGLLDVTRGSTDVTVSNNWFRDQNKVMLLGHDDGYARDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKESNGNGGAWEFHSVRDVFENGASFTETKGGRVPKPNYNAEQSFGVADAKSVRSLTRSSGALRCTKTSRC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0837 391 Pfam Pectate lyase 131 308 IPR002022 -
Dere09g0837 391 PANTHER PECTATE LYASE 18-RELATED 38 388 IPR045032 GO:0030570
Dere09g0837 391 SMART amb_all 117 314 IPR002022 -
Dere09g0837 391 Gene3D - 40 384 IPR012334 -
Dere09g0837 391 SUPERFAMILY Pectin lyase-like 63 384 IPR011050 -
Dere09g0837 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Dere09g0837 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Dere09g0837 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Dere09g0837 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Dere09g0837 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Dere09g0837 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Dere09g0837 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0837 Dere-ChrDere09 11214843 11216270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0837 71 318 Polysaccharide Lyase AT5G09280 73.790 7.78e-145 411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0837 09 11214843 11216270 Dere09g0837 09 11214843 11216270 ECH