Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0829 ATGGGAGTAGCAACACCGCCACTTGCATCAATACTCTCTCACTCCAAGACCCACCATTCCTTTTTCACCTTTGACAATAAGTCCGCTTCTTCCAATTCTATGTCCATGTCCCAAGATTATCACCAAGCAGGAATCTTCAGCTTCTCGAATGGGTTCGAGAGGTCCACTGTCACTCAGCAACCTCATCAGCAGCAGCAGATCCGGAGAGACAAAGTGAGGGTGCAAGGCTTCGACCCACCGCCACCGTTAGTGGGTATTGAGGAAGTGGAATCCGGAGGCCTTCCTGTGTACGAATCCGCAGGGATGTTATCGGAGATGTTTAATTTCCCTCCTGCCGGAGCCACGGCCTCTGAATTGTTGGAACAACCCTTGACGGCGACGTATCGGACGTCCAGCAGGCCACAAGCTGCAGCGATGGGCAGCGAGTGGTACGGAAACCGACAAGGCATGGTAAGTGGTTTGGGAGATTCAAAGAATCACCACCACCACCACCATCATCATCAGCGTCAGATTTCAAGCATGAATGCAGACTCAGCGGCTGCCATGCAGCTTTTTCTCATGAACCCTCAAACCAGATCGCCTTCCCCTCCTCATAATCCCTCCACTAACTCCTCCACCCTCCACATGCTGCTCCCCAATCCATCCTCTTCTCTGCAAGGATTCACTGGCCCTGGAGCGGGAGGGGGTTTTGGTCAATTCACATGGGTTCCACTTCCTGAAGGTTCTCAAGACGGTGGCACCAACGCCAACGCCAACCCCAACCCAGGTGAAATAGGAGGGGTTGTGGAAGGCCAAGGTCTTTCCTTATCGTTGTCGTCTTCGTTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGATAGCGGGTTTCTCAATTATTACAGTCAAGGTGCTGCTGGAGGGTCCTCATCGGCTCAGTATCCGTATAAGAATTTGATTGGTCAAACTCAAACCCACACATTGCATTTACAAGGAGTGGCTCAGAACCACCAAGTCCAAGTTGGTTTCGGGTCATCCTTAGGGGTTGCGAATGTGCTGAGGAACTCCAAGTATGTGAAGGCTGCTCAAGAATTGCTTGAAGAATTCTGCAGCGTTGGGAGGGGTCAGTTCAAGAAGAACAAATTCAGTAGGCAGAATTCCAACCCTAATTCCAATCAGGGTGTGGGTGCTGGTGCCGCTGCTTCTTCATCATCCTCCAAAGATCCTCTTCCTTTGTCAGCCGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCCATGCTTGACGAGGTGGACCGTAGATACAATCACTACTGCGAACAAATGCAAATGGTAGTGAACTCATTTGACTTGGTGATGGGTTTTGGGGCGGCGGTTCCATACACGGCGCTGGCGCAGAAAGCAATGTCAAGGCATTTCCGGTGTCTAAAGGATGCAATATCAGCGCAGCTGAAGCACAGTTGCGAGGTGTTGGGCGAGAAAGAAGGGTTGGGTTCGTCAGGTTTGACCAAGGGTGAGACTCCAAGGCTGAAGCTGCTGGAGCAAAGCCTGAGACAGCAGAGAGCCTTCCATCAGATGGGCATGATGGAACAGGAAGCCTGGAGACCCCAGCGAGGCCTCCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGACTATCGAGAAATCAGGTATCAAACTGGTTCATTAACGCCAGGGTACGGTTGTGGAAACCCATGGTAGAAGATATGTACCAGCAAGAGCTTAAAGAAGCGGAGGGTGCAGAAGAGAGAGAGATGAACCAAAGTAACAGCAACACTAGTGGCCACCTGGCACAAACTCCAACGCCTACAACCACAACCACAACCACATCAACAGCAACAGCGCCACCTACAACACCAACAGCCAAAAGATCCGACGTCAATGCCACCGAAAGCGACCCTTCACTCGCAGCAATCAATAGACAAGCCTTCTCGGAAAACCAAGCAAAGCAGCAGTCCAGCACTACCACCACCACCATCACCAACACCAACACCACCGCCTCTGAGGTGGCGCCACCCGTGTCCCAGTGTTTCCCCTCAGACCGGACCCCGCACAGATCAATGCCAAATGATGACACGTGTCGGCATGGCAGCTTGGTTGGAGCAGATTACGGGACCACCTCTGCCACTGCTGACATTGGATCTACTCTCATTAGGTTCGGGACCACCGCCGGCGATGTGTCACTCACCCTAGGGCTACGCCACGCCGGGAACATCCCTGACACCTCTCCTTTCTCTGTTAGAGACTTCGGAGGCATTTAA 2337 0.5212 MGVATPPLASILSHSKTHHSFFTFDNKSASSNSMSMSQDYHQAGIFSFSNGFERSTVTQQPHQQQQIRRDKVRVQGFDPPPPLVGIEEVESGGLPVYESAGMLSEMFNFPPAGATASELLEQPLTATYRTSSRPQAAAMGSEWYGNRQGMVSGLGDSKNHHHHHHHHQRQISSMNADSAAAMQLFLMNPQTRSPSPPHNPSTNSSTLHMLLPNPSSSLQGFTGPGAGGGFGQFTWVPLPEGSQDGGTNANANPNPGEIGGVVEGQGLSLSLSSSLEAAKAEELRMGDSGFLNYYSQGAAGGSSSAQYPYKNLIGQTQTHTLHLQGVAQNHQVQVGFGSSLGVANVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQNSNPNSNQGVGAGAAASSSSSKDPLPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCEVLGEKEGLGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEREMNQSNSNTSGHLAQTPTPTTTTTTTSTATAPPTTPTAKRSDVNATESDPSLAAINRQAFSENQAKQQSSTTTTTITNTNTTASEVAPPVSQCFPSDRTPHRSMPNDDTCRHGSLVGADYGTTSATADIGSTLIRFGTTAGDVSLTLGLRHAGNIPDTSPFSVRDFGGI 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0829 778 MobiDBLite consensus disorder prediction 373 403 - -
Dere09g0829 778 Pfam Homeobox KN domain 547 586 IPR008422 GO:0003677|GO:0006355
Dere09g0829 778 MobiDBLite consensus disorder prediction 688 718 - -
Dere09g0829 778 CDD homeodomain 530 591 IPR001356 GO:0003677
Dere09g0829 778 SMART HOX_1 530 594 IPR001356 GO:0003677
Dere09g0829 778 SMART prehox3 340 478 IPR006563 -
Dere09g0829 778 MobiDBLite consensus disorder prediction 604 658 - -
Dere09g0829 778 Gene3D - 533 595 - -
Dere09g0829 778 Coils Coil 593 613 - -
Dere09g0829 778 MobiDBLite consensus disorder prediction 373 409 - -
Dere09g0829 778 MobiDBLite consensus disorder prediction 610 658 - -
Dere09g0829 778 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 180 615 - -
Dere09g0829 778 Pfam Associated with HOX 345 477 IPR006563 -
Dere09g0829 778 ProSiteProfiles 'Homeobox' domain profile. 527 590 IPR001356 GO:0003677
Dere09g0829 778 MobiDBLite consensus disorder prediction 152 174 - -
Dere09g0829 778 FunFam BEL1-like homeodomain protein 4 533 595 - -
Dere09g0829 778 MobiDBLite consensus disorder prediction 58 88 - -
Dere09g0829 778 SUPERFAMILY Homeodomain-like 532 597 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0829 Dere-ChrDere09 11142423 11148163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0829 35 577 Homeobox Transcription Factor Family AT4G36870 52.470 3.46e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere09g0829 POX 6.2e-52 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0829 09 11142423 11148163 Dere09g0829 09 11142423 11148163 ECH