Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0779 ATGTCATCATCGAATTCCCCGTGCGCTGCGTGCAAGTTTCTGAGGCGGAAATGCACGCAAGAATGCGTGTTCGCACCTTACTTCCCACCGGACAACCCTCAGAGGTTTGCTTACGTCCACAAGGTATTCGGCGCAAGCAATGTCGCAAAGCTTCTCAATGAGCTCAACGCTGCGCAGCGAGACGACGCCGTCAAGTCTCTAGCTTACGAAGCCGAGGCTCGTCTCCGGGACCCAGTCTATGGTTGTGTGGGTCTCATCTCCCTCCTCCAGCACAGGCTCAGGCAGATCCAAGTCGAACTTAACAATGCCAAGAAGGAGCTCGCAACGTATATTGGACCTCAGGCTCTTCAGCCCATGCCTCCCCCCATTTTGTCGCCCGGAATGATATCACAACAGCACCCAAGCAACCCATATTCCTCCACCACCGCCTATCCCTACAATAACATGCCGCCGACTCTGCCGATGACGAATATTCCGACGGGTGGCTCTTCGCATAGCGGGCAACTGGTGATTCGTGACCCTTCACAACAGCATCAGATCTTGGATGCTCAGCAACTGGCTGCGGCTGTGGCGGCGAGAGAGCAGCAAGATATGTTTCGAGGTTTTGAGCAGCAGCAGCCACAAGATTTTCTGAGGTTCAATAGTGGATACGAGGTGGGTTCGGTTTCTGGGAGTGAATTCACCAACCAGATGTCTACAACTGCTGCCCCCACTGAGATGTCTCCGTCCTTGGCTCTGGGCACCTTTGACAGCCCCTATGGCCAGATGCGGCCACAGGAAACCGAACATCACCACCCTCACCACCATCAGCTTCAAGCACAGCTAATGCTTTCACCCCAGCAACCACAACCACAACAACAAACCCAGCAATCCCAGCAACCCCACCAGCAGCTCGAGTCAGAGAGCGGGGAGGGTAGGAGTGGCATAGGTCTTTCTTGTTGA 942 0.5467 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHRLRQIQVELNNAKKELATYIGPQALQPMPPPILSPGMISQQHPSNPYSSTTAYPYNNMPPTLPMTNIPTGGSSHSGQLVIRDPSQQHQILDAQQLAAAVAAREQQDMFRGFEQQQPQDFLRFNSGYEVGSVSGSEFTNQMSTTAAPTEMSPSLALGTFDSPYGQMRPQETEHHHPHHHQLQAQLMLSPQQPQPQQQTQQSQQPHQQLESESGEGRSGIGLSC 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0779 313 MobiDBLite consensus disorder prediction 231 313 - -
Dere09g0779 313 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Dere09g0779 313 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 291 - -
Dere09g0779 313 Coils Coil 86 106 - -
Dere09g0779 313 MobiDBLite consensus disorder prediction 231 245 - -
Dere09g0779 313 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Dere09g0779 313 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0779 Dere-ChrDere09 10744557 10745498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0779 1 252 AS2 family AT5G66870 54.074 4.53e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere09g0779 LOB 1.6e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0560 13 7031177 7032157 Dere09g0779 09 10744557 10745498 CCT
Dere09g0779 09 10744557 10745498 Dere09g0779 09 10744557 10745498 ECH